Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1659.8 830 100.0
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1397.1 825 83.9
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1376.3 823 82.9
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1357.4 864 79.5
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 831 79.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1329.3 810 81.2
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1313.1 822 81.0
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 820 79.1
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 821 79.5
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1297.0 808 79.7
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1296.2 819 79.7
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1295.4 818 79.3
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1295.0 793 81.2
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 823 79.2
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1291.2 812 78.9
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 827 78.6
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 816 79.3
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 808 78.6
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1282.3 820 77.7
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1281.9 826 77.8
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1281.9 820 78.2
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1281.5 817 79.1
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 828 74.3
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1280.4 819 78.0
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 821 78.0
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 829 78.0
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1279.2 824 77.2
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1278.5 828 77.9
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1278.5 821 78.3
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 821 78.7
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 821 78.0
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 820 78.0
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1276.2 819 78.4
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1275.0 829 78.2
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1274.2 834 77.1
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1273.8 823 78.3
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1273.8 822 78.5
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1273.8 823 78.4
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1273.8 815 77.5
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 825 77.5
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 821 77.8
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1271.5 821 78.3
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1271.5 822 77.5
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 814 78.0
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 821 77.5
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1269.6 822 78.2
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 820 77.4
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 819 78.3
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1267.3 833 76.4
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1266.5 805 77.8
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1266.1 807 78.7
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 813 77.0
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 835 76.9
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 819 77.9
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 821 78.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1261.9 818 77.1
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1261.9 826 76.9
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1261.9 813 78.1
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1261.1 826 78.0
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1260.7 819 78.0
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1260.0 826 76.9
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 819 76.7
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1257.7 821 77.3
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 815 76.7
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 819 76.6
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1253.8 821 77.2
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 828 76.3
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 819 77.2
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1252.3 812 77.2
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1251.9 849 74.3
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1251.9 820 77.6
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1251.9 811 77.8
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1250.3 825 76.5
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1250.0 869 73.5
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1249.6 820 76.0
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1249.2 890 72.7
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1248.0 806 77.4
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1247.6 831 75.6
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1246.5 821 76.9
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1246.1 817 76.1
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 841 74.6
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1243.8 819 77.0
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1243.0 783 78.8
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1241.5 821 76.0
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1239.9 808 77.5
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1238.0 861 71.3
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1236.5 821 75.9
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1235.7 814 77.3
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1235.7 780 79.2
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 828 75.5
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1234.2 831 74.5
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 822 76.4
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1224.2 814 75.7
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1224.2 823 75.5
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1221.8 819 76.8
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1220.7 822 74.9
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1220.3 822 75.4
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1219.9 813 75.2
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1218.8 816 76.1
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1217.6 818 75.6
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1217.6 818 75.6
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1217.6 818 75.6
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1215.7 826 75.4
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1215.7 833 75.0
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1214.5 829 74.7
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1214.1 863 73.0
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1213.0 830 74.5
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1213.0 821 74.9
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1212.2 827 74.6
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1211.4 820 76.1
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1207.6 785 77.7
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1207.6 785 77.7
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1207.6 821 74.9
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1207.6 813 75.3
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1206.4 817 74.8
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1204.9 823 75.0
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1203.7 785 76.9
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1201.8 839 73.9
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1200.7 828 74.0
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1200.7 828 74.0
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1200.7 828 74.0
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1200.7 828 74.0
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1192.9 817 73.9
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1177.5 870 70.9
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1175.6 763 76.7
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1171.4 849 69.6
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1170.6 761 77.1
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1168.3 818 73.0
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1161.4 798 73.1
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1161.0 816 72.5
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1154.4 691 82.3
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1151.0 821 72.4
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1139.4 757 75.8
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1137.9 814 69.3
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1130.5 821 72.7
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1127.9 828 71.6
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1107.4 802 70.4
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1100.9 787 71.2
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1100.1 811 71.4
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1088.9 812 68.5
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1086.6 723 77.2
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 5.7e-312 1074.3 771 69.5
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 6.1e-272 941.0 587 76.7
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 3.1e-268 928.7 595 71.9
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.5e-249 866.7 813 59.0
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 9.4e-249 864.0 594 71.2
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 2.2e-245 852.8 535 80.6
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 8.5e-242 840.9 521 79.1
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.9e-173 612.5 711 49.9
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 3.1e-151 540.0 460 60.2
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 7.5e-129 465.7 348 73.3
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.4e-127 460.7 310 71.9
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 4.2e-124 449.9 318 75.2
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.7e-99 366.7 397 53.1
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.4e-90 338.6 581 45.1
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.2e-89 335.5 274 62.4
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.1e-58 232.6 156 75.0
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 3.8e-48 197.6 132 74.2
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 6.7e-45 186.8 163 58.9
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 2.1e-38 165.2 477 29.8
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.6e-30 139.0 453 28.0
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.1e-30 137.1 472 25.6
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 5.1e-29 134.0 76 81.6
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.8e-26 125.6 430 27.4
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 5.9e-25 120.6 63 87.3
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 5.9e-25 120.6 96 65.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.5e-23 115.2 473 26.6
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-16 92.8 220 32.3
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.3e-16 92.8 148 38.5
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 2.9e-16 91.7 60 73.3
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-16 91.3 266 27.4
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 4.2e-15 87.8 83 50.6
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.7e-14 84.3 104 41.3
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 7.7e-09 67.0 70 48.6


User provided reference genes

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