Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 7.0e-170 600.5 300 100.0
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 5.4e-154 547.7 300 91.3
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 4.1e-146 521.5 301 87.0
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 5.2e-141 504.6 300 84.0
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 1.4e-138 496.5 301 83.1
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 3.3e-135 485.3 298 82.9
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 7.3e-135 484.2 300 80.7
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 9.6e-135 483.8 302 81.5
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.6e-134 483.0 300 81.3
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.1e-133 478.8 300 78.7
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 3.1e-133 478.8 300 79.3
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 3.1e-133 478.8 300 79.3
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.5e-132 476.5 300 78.7
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 2.6e-132 475.7 300 79.3
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 8.1e-126 454.1 302 76.2
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 1.4e-125 453.4 300 73.7
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 6.9e-125 451.1 303 76.2
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 6.9e-125 451.1 300 75.7
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 9.9e-124 447.2 303 74.3
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.9e-123 445.7 302 74.5
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 2.4e-122 442.6 297 74.4
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 3.5e-121 438.7 303 74.6
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.0e-120 437.2 298 73.8
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.3e-120 436.8 297 74.4
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 1.9e-119 433.0 303 73.3
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 4.0e-117 425.2 296 74.7
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 4.0e-117 425.2 296 74.7
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 9.0e-117 424.1 291 74.2
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 9.0e-117 424.1 302 72.5
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.6e-116 422.5 296 74.3
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.8e-116 421.4 298 73.8
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.2e-115 419.5 302 70.5
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 3.8e-115 418.7 285 76.1
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 8.4e-115 417.5 298 72.1
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 8.4e-115 417.5 304 72.4
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.4e-114 416.8 298 70.5
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 2.5e-114 416.0 305 72.1
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 5.5e-114 414.8 298 71.1
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 5.5e-114 414.8 290 73.8
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 3.5e-113 412.1 296 71.6
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 1.0e-112 410.6 300 69.7
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 1.8e-112 409.8 296 71.6
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 1.8e-112 409.8 297 70.7
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.9e-112 408.7 298 71.5
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 6.7e-112 407.9 300 71.7
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 6.7e-112 407.9 297 72.1
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.7e-112 407.9 296 70.6
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 8.7e-112 407.5 303 69.0
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 8.7e-112 407.5 298 68.5
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.1e-111 407.1 299 71.9
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 1.1e-111 407.1 300 71.3
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.1e-111 407.1 303 70.0
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.5e-111 406.8 296 70.9
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.5e-111 406.8 296 71.3
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.5e-111 406.8 298 72.1
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.5e-111 406.8 302 70.5
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 1.9e-111 406.4 300 71.3
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 2.5e-111 406.0 300 71.3
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 2.5e-111 406.0 291 71.8
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 3.3e-111 405.6 303 70.6
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 4.3e-111 405.2 298 70.8
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 9.6e-111 404.1 297 70.4
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.6e-110 403.3 298 70.8
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 2.8e-110 402.5 296 70.3
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 3.7e-110 402.1 289 70.9
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 3.7e-110 402.1 296 70.6
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 6.3e-110 401.4 295 70.2
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 1.1e-109 400.6 295 70.5
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.4e-109 400.2 297 70.4
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.4e-109 400.2 297 71.4
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 1.8e-109 399.8 296 71.6
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 1.8e-109 399.8 294 69.7
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.4e-109 399.4 295 70.2
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 2.4e-109 399.4 295 69.5
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 4.1e-109 398.7 296 71.6
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 6.9e-109 397.9 299 69.6
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.2e-108 397.1 296 71.6
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.2e-108 397.1 296 71.3
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 1.2e-108 397.1 296 71.3
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.2e-108 397.1 295 69.8
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.5e-108 396.7 300 70.0
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.0e-108 396.4 296 71.3
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 2.0e-108 396.4 296 70.9
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 2.0e-108 396.4 296 71.3
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 2.0e-108 396.4 301 67.1
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.6e-108 396.0 296 71.3
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 3.4e-108 395.6 296 70.9
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.4e-108 395.6 298 71.1
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 7.6e-108 394.4 296 70.9
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 7.6e-108 394.4 296 70.9
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 7.6e-108 394.4 296 70.9
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 7.6e-108 394.4 295 69.5
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 7.6e-108 394.4 303 68.6
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.0e-107 394.0 300 70.0
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 1.0e-107 394.0 288 71.2
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.3e-107 393.7 300 68.0
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.7e-107 393.3 301 70.1
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 2.2e-107 392.9 296 69.6
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 2.2e-107 392.9 298 68.5
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 2.2e-107 392.9 298 68.5
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.9e-107 392.5 298 68.5
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.9e-107 392.5 298 68.5
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 2.9e-107 392.5 303 69.3
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 2.9e-107 392.5 296 70.3
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 2.9e-107 392.5 298 68.8
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 3.8e-107 392.1 303 69.3
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.0e-107 391.7 302 67.5
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 5.0e-107 391.7 304 68.1
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.4e-106 390.2 297 68.4
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 1.9e-106 389.8 304 68.1
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 2.5e-106 389.4 297 69.7
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 3.2e-106 389.0 289 67.5
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 4.2e-106 388.7 294 68.0
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 5.5e-106 388.3 298 68.8
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 5.5e-106 388.3 289 68.2
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 9.3e-106 387.5 290 71.0
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 1.2e-105 387.1 290 71.0
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 2.1e-105 386.3 298 68.1
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 4.6e-105 385.2 300 68.0
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 7.9e-105 384.4 290 71.0
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 7.9e-105 384.4 298 68.8
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.5e-103 380.2 299 66.9
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 1.5e-103 380.2 299 66.9
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 2.5e-103 379.4 304 65.5
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 4.3e-103 378.6 286 68.9
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 1.3e-102 377.1 299 66.9
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 2.8e-102 375.9 301 68.4
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 6.9e-101 371.3 298 65.4
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 2.0e-100 369.8 295 69.2
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.0e-99 367.5 298 66.8
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.3e-99 367.1 292 68.5
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 1.4e-98 363.6 315 63.5
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 2.0e-95 353.2 303 64.4
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 4.3e-95 352.1 313 62.9
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 5.7e-95 351.7 313 62.6
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 1.3e-94 350.5 291 63.6
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 3.7e-94 349.0 317 60.3
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 3.1e-93 345.9 301 62.8
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 5.3e-93 345.1 301 62.5
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.5e-90 336.3 252 67.9
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.2e-89 334.0 301 60.8
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 4.5e-84 315.5 299 59.2
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 5.0e-83 312.0 268 62.3
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 8.5e-83 311.2 300 58.7
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 3.2e-74 282.7 286 54.5
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 5.7e-71 271.9 199 70.4
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.2e-70 270.0 221 66.1
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 1.6e-65 253.8 276 52.9
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.6e-65 253.8 285 50.2
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 2.7e-65 253.1 283 52.3
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 8.6e-59 231.5 142 79.6
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.3e-54 217.6 283 45.9
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 6.4e-54 215.3 132 78.0
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 8.3e-54 214.9 171 64.3
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 2.7e-52 209.9 131 77.1
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 5.9e-52 208.8 273 48.7
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 3.4e-39 166.4 155 58.1
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 2.4e-29 133.7 101 66.3
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 7.3e-26 122.1 115 59.1
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.6e-25 120.9 335 28.4
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 6.9e-24 115.5 113 58.4
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 6.9e-24 115.5 87 73.6
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 1.4e-21 107.8 99 62.6
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 1.3e-14 84.7 71 60.6
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.3e-11 74.7 90 53.3
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 5.6e-10 69.3 72 52.8
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 3.8e-06 56.6 67 49.3


User provided reference genes

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