Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 2521.1 1255 100.0
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 2188.3 1255 86.0
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 2048.5 1316 77.7
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2006.9 1263 79.0
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2005.3 1263 78.8
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1998.4 1254 78.7
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1975.7 1254 77.6
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1969.1 1254 77.4
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1958.7 1263 77.1
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1946.8 1254 76.7
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1939.9 1262 76.1
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1934.1 1261 75.5
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1929.8 1256 76.8
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1925.2 1262 75.3
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1922.9 1265 75.5
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1917.9 1266 75.0
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1916.4 1269 74.5
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1914.0 1255 75.5
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1913.3 1263 75.5
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1912.9 1260 74.7
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1912.1 1262 74.8
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1911.7 1257 75.5
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1910.2 1254 75.8
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1907.1 1258 75.0
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1906.7 1255 74.9
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1906.7 1274 74.3
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1904.4 1273 75.1
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1901.3 1284 74.5
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1899.8 1262 74.4
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1897.9 1258 74.8
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1897.5 1261 74.1
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1896.7 1258 74.8
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1894.8 1259 74.7
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1894.8 1258 74.7
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1894.8 1261 73.8
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1893.6 1258 74.7
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1891.7 1293 72.7
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1890.9 1267 74.0
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1890.5 1261 73.8
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1883.6 1271 74.0
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1882.1 1264 72.9
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1880.9 1259 73.0
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1880.5 1259 73.1
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1880.5 1264 72.9
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1880.1 1259 74.0
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1873.2 1258 72.9
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1869.4 1264 72.9
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1864.7 1303 71.3
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1864.7 1260 73.3
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1860.1 1243 74.7
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1859.0 1264 72.3
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1856.3 1263 72.6
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1856.3 1245 73.5
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1852.4 1260 72.9
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1851.3 1262 73.1
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1851.3 1256 73.0
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1849.3 1262 72.9
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1849.3 1262 72.7
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1847.0 1266 72.4
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1842.8 1254 72.7
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1840.9 1260 71.8
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1839.3 1269 73.3
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1837.4 1265 71.9
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1836.6 1262 71.9
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1835.5 1262 71.9
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1833.9 1263 71.9
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1833.9 1259 72.2
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1832.0 1264 71.8
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1830.8 1271 71.6
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1826.2 1253 73.3
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1825.8 1259 72.0
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1823.5 1327 69.6
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1820.4 1259 71.8
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1817.7 1260 71.3
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1816.6 1261 71.4
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1816.2 1275 70.9
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1813.1 1262 71.2
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1811.2 1261 71.0
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1808.9 1262 70.9
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1808.9 1264 71.3
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1806.6 1262 70.9
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1805.0 1275 70.0
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1802.7 1521 62.6
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1801.9 1286 70.0
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1799.6 1236 73.1
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1780.4 1255 70.7
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1777.7 1253 70.9
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1774.2 1093 80.5
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1768.1 1254 70.4
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1767.7 1259 70.5
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1716.0 1261 67.2
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1698.7 1164 72.6
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1695.6 1046 80.0
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1670.2 1162 71.2
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1624.8 1223 65.9
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1605.5 1255 63.5
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1582.8 1092 73.5
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1571.6 1081 71.1
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1525.0 1040 73.8
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1516.5 1005 74.6
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1469.9 1034 71.2
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1464.9 1063 68.7
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1390.2 927 75.8
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1382.9 1253 59.5
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1365.5 1015 67.3
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1350.1 856 77.3
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1315.1 1394 50.5
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1200.7 1368 48.1
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1095.9 747 71.2
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 7.7e-311 1070.8 864 63.5
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 3.8e-310 1068.5 775 69.7
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 4.7e-292 1008.4 1154 47.3
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 7.0e-280 968.0 1010 53.4
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 2.5e-261 906.4 592 77.4
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.5e-245 853.2 536 77.8
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 8.4e-241 838.2 836 54.8
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.1e-203 714.9 1435 33.7
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 1.8e-203 714.1 446 76.9
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 2.1e-183 647.5 456 74.1
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.2e-156 557.8 483 58.0
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 2.7e-146 524.2 306 80.7
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 6.9e-118 429.9 323 65.3
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 3.1e-102 377.9 205 85.9
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 3.1e-94 351.3 372 49.5
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.3e-92 345.9 316 59.5
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.0e-85 322.0 194 76.8
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 3.8e-84 317.8 255 61.6
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 1.8e-78 298.9 172 82.6
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 6.7e-73 280.4 159 84.3
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.0e-72 278.9 203 69.0
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.8e-70 272.3 199 68.3
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 5.3e-70 270.8 261 55.9
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 5.3e-70 270.8 261 55.9
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 5.3e-70 270.8 261 55.9
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 9.1e-70 270.0 152 82.9
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.0e-68 266.5 263 52.9
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.7e-63 249.2 451 35.0
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 1.2e-58 233.0 182 65.4
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 2.1e-58 232.3 181 63.0
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.8e-57 229.2 145 77.2
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.8e-55 221.1 169 68.0
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.5e-53 214.9 132 77.3
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 5.0e-52 211.1 211 53.1
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.3e-47 196.4 158 62.7
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 8.6e-44 183.7 137 63.5
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.5e-43 182.2 108 77.8
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.6e-42 178.3 121 76.0
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.7e-42 177.9 108 76.9
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.9e-41 173.7 108 75.9
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.9e-41 173.7 108 75.9
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.4e-40 171.4 108 76.9
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 1.1e-38 166.8 124 66.1
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.0e-36 157.9 98 73.5
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 1.1e-35 156.8 116 64.7
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.5e-35 155.6 98 81.6
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 2.8e-34 152.1 102 70.6
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.5e-32 146.4 95 72.6
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.6e-29 136.3 87 69.0
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 3.0e-28 132.1 124 58.1
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.9e-27 129.4 101 65.3
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 3.1e-25 122.1 65 80.0
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 3.4e-24 118.6 119 47.9
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 7.5e-24 117.5 107 59.8
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 8.6e-20 104.0 694 23.5
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.6e-18 99.8 62 77.4
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 2.0e-16 92.8 57 75.4
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.7e-15 89.7 52 75.0
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 2.2e-15 89.4 62 69.4
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 2.9e-15 89.0 81 55.6
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 8.6e-12 77.4 45 82.2
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 8.6e-12 77.4 99 43.4
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 2.1e-10 72.8 378 21.7
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.1e-09 70.5 69 42.0
Sopen07g031630 Solanum pennellii HOM05D004029 ORTHO05D004613 2.4e-09 69.3 60 58.3
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 1.2e-08 67.0 66 56.1
ATR0693G286 Amborella trichopoda HOM05D004029 ORTHO05D004613 9.9e-08 63.9 39 76.9


User provided reference genes

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