Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1292 Avicennia marina HOM05D006235 ORTHO05D003296 1.2e-138 496.5 255 100.0
MSTRG.1294 Avicennia marina HOM05D006235 ORTHO05D003296 3.8e-100 368.6 261 77.0
Cc10_g03250 Coffea canephora HOM05D006235 ORTHO05D003296 1.0e-73 280.8 249 61.0
SGA_v2.0_scaffold48G18060 Striga asiatica HOM05D006235 ORTHO05D003296 1.0e-73 280.8 249 63.1
SalBow7G2606 Salvia bowleyana HOM05D006235 ORTHO05D003296 5.7e-72 275.0 257 61.9
Solyc04g080000.1 Solanum lycopersicum HOM05D006235 ORTHO05D003296 8.3e-71 271.2 243 60.5
Sopen04g033590 Solanum pennellii HOM05D006235 ORTHO05D003296 8.3e-71 271.2 243 60.5
Nitab4.5_0003246g0120 Nicotiana tabacum HOM05D006235 ORTHO05D003296 2.4e-70 269.6 239 60.7
PGSC0003DMG400027850 Solanum tuberosum HOM05D006235 ORTHO05D003296 5.4e-70 268.5 247 59.1
Nitab4.5_0000110g0280 Nicotiana tabacum HOM05D006235 ORTHO05D003296 9.2e-70 267.7 239 60.3
COL.COLO4_26358 Corchorus olitorius HOM05D006235 ORTHO05D003296 1.2e-69 267.3 256 58.6
Ciclev10002211m.g Citrus clementina HOM05D006235 ORTHO05D003296 1.1e-67 260.8 255 55.7
Thecc.08G023000 Theobroma cacao HOM05D006235 ORTHO05D003296 1.5e-67 260.4 256 56.6
unitig_749.g13843 Utricularia gibba HOM05D006235 ORTHO05D003296 3.3e-67 259.2 255 56.1
Gorai.009G204400 Gossypium raimondii HOM05D006235 ORTHO05D003296 4.3e-67 258.8 239 60.3
CAN.G1126.24 Capsicum annuum HOM05D006235 ORTHO05D003296 5.6e-67 258.5 256 57.0
CiPaw.15G074000 Carya illinoinensis HOM05D006235 ORTHO05D003296 2.1e-66 256.5 254 55.5
TWI56G0916 Tripterygium wilfordii HOM05D006235 ORTHO05D003296 2.1e-66 256.5 258 55.8
Gohir.D05G199200 Gossypium hirsutum HOM05D006235 ORTHO05D003296 4.7e-66 255.4 239 59.4
GSVIVG01009659001 Vitis vinifera HOM05D006235 ORTHO05D003296 6.1e-66 255.0 263 55.1
CSS0007357 Camellia sinensis var. sinensis HOM05D006235 ORTHO05D003296 8.0e-66 254.6 247 57.9
CSS0035456 Camellia sinensis var. sinensis HOM05D006235 ORTHO05D003296 8.0e-66 254.6 247 57.9
Dinv36049 Davidia involucrata HOM05D006235 ORTHO05D003296 8.0e-66 254.6 248 57.3
Atru.chr13.532 Acer truncatum HOM05D006235 ORTHO05D003296 1.8e-65 253.4 257 55.3
Rhsim06G0035900 Rhododendron simsii HOM05D006235 ORTHO05D003296 1.8e-65 253.4 237 58.6
Aqoxy5G01690 Aquilegia oxysepala HOM05D006235 ORTHO05D003296 2.3e-65 253.1 245 55.9
MD08G1032200 Malus domestica HOM05D006235 ORTHO05D003296 3.1e-65 252.7 245 58.8
Duzib093G1545 Durio zibethinus HOM05D006235 ORTHO05D003296 4.0e-65 252.3 248 56.9
MD15G1028900 Malus domestica HOM05D006235 ORTHO05D003296 5.2e-65 251.9 260 56.9
Migut.C00693 Erythranthe guttata HOM05D006235 ORTHO05D003296 6.8e-65 251.5 261 56.7
Manes.05G162800 Manihot esculenta HOM05D006235 ORTHO05D003296 6.8e-65 251.5 252 56.3
Cfa018433 Carpinus fangiana HOM05D006235 ORTHO05D003296 8.9e-65 251.1 262 55.0
Sabra02G0104600 Salix brachista HOM05D000481 ORTHO05D003296 2.6e-64 249.6 253 55.7
TWI36G1585 Tripterygium wilfordii HOM05D006235 ORTHO05D003296 2.6e-64 249.6 255 55.3
Haze_17630 Corylus avellana HOM05D000100 ORTHO05D000052 3.4e-64 249.2 258 55.0
Thhalv10011736m.g Eutrema salsugineum HOM05D006235 ORTHO05D003296 4.4e-64 248.8 239 56.1
Cpa.g.sc64.60 Carica papaya HOM05D006235 ORTHO05D003296 5.8e-64 248.4 258 54.7
Potri.014G042000 Populus trichocarpa HOM05D006235 ORTHO05D003296 1.3e-63 247.3 256 55.9
Sabra14G0030600 Salix brachista HOM05D006235 ORTHO05D003296 2.2e-63 246.5 251 55.4
MELO3C010926.2 Cucumis melo HOM05D006235 ORTHO05D003296 6.4e-63 245.0 258 54.3
CsaV3_2G028520 Cucumis sativus L. HOM05D006235 ORTHO05D003296 6.4e-63 245.0 251 54.6
RcHm_v2.0_Chr6g0300611 Rosa chinensis HOM05D006235 ORTHO05D003296 6.4e-63 245.0 260 54.6
Potri.002G134000 Populus trichocarpa HOM05D006235 ORTHO05D003296 1.4e-62 243.8 253 55.7
QL01p055631 Quercus lobata HOM05D006235 ORTHO05D003296 1.4e-62 243.8 254 53.9
QL02p007721 Quercus lobata HOM05D006235 ORTHO05D003296 1.4e-62 243.8 254 53.9
Sed0027834 Sechium edule HOM05D006235 ORTHO05D003296 1.9e-62 243.4 256 55.1
AL1G54110 Arabidopsis lyrata HOM05D006235 ORTHO05D003296 3.2e-62 242.7 239 54.4
THA.LOC104816110 Tarenaya hassleriana HOM05D006235 ORTHO05D003296 4.1e-62 242.3 245 52.7
FAN15G1700 Fragaria x ananassa HOM05D006235 ORTHO05D003296 5.4e-62 241.9 239 57.7
HanXRQChr09g0268521 Helianthus annuus HOM05D006235 ORTHO05D003296 7.0e-62 241.5 248 54.4
Ca_13341_v3 Cicer arietinum L. HOM05D006235 ORTHO05D003296 9.2e-62 241.1 242 55.4
FvH4_2g40140 Fragaria vesca HOM05D006235 ORTHO05D003296 1.2e-61 240.7 239 57.7
Prupe.1G382600 Prunus persica HOM05D006235 ORTHO05D003296 1.2e-61 240.7 249 55.8
PGR031G3079 Punica granatum HOM05D006235 ORTHO05D003296 1.2e-61 240.7 240 57.5
PSO170G2537 Papaver somniferum HOM05D006235 ORTHO05D003296 2.0e-61 240.0 241 54.4
AT1G47750 Arabidopsis thaliana HOM05D006235 ORTHO05D003296 2.7e-61 239.6 239 53.1
PSO700G0260 Papaver somniferum HOM05D006235 ORTHO05D003296 4.6e-61 238.8 241 53.5
CANSAT01G0611 Cannabis sativa HOM05D006235 ORTHO05D003296 6.0e-61 238.4 244 54.5
Actinidia15304 Actinidia chinensis HOM05D006235 ORTHO05D003296 3.9e-60 235.7 246 55.3
Carub.0001s3660 Capsella rubella HOM05D006235 ORTHO05D003296 3.9e-60 235.7 242 52.1
TAR381G0550 Trochodendron aralioides HOM05D006235 ORTHO05D003296 3.9e-60 235.7 262 52.7
MBI16_g28233_MAGBIO Magnolia biondii HOM05D006235 ORTHO05D003296 5.0e-60 235.3 259 53.3
Lj5g0012777 Lotus japonicus HOM05D006235 ORTHO05D003296 8.6e-60 234.6 238 55.5
Sp1g34750 Schrenkiella parvula HOM05D006235 ORTHO05D003296 1.9e-59 233.4 249 53.4
SpUn0092_0030 Schrenkiella parvula HOM05D006235 ORTHO05D003296 1.9e-59 233.4 249 53.4
DCAR_019511 Daucus carota HOM05D006235 ORTHO05D003296 2.5e-59 233.0 247 54.7
Sed0009855 Sechium edule HOM05D006235 ORTHO05D003296 2.5e-59 233.0 256 55.5
Nn5g29519 Nelumbo nucifera HOM05D006235 ORTHO05D003296 1.2e-58 230.7 253 51.8
CARHR037350 Cardamine hirsuta HOM05D006235 ORTHO05D003296 1.6e-58 230.3 237 52.7
Lj4P783T56 Lonicera japonica HOM05D006235 ORTHO05D003296 1.6e-58 230.3 247 53.0
Medtr1g021995 Medicago truncatula HOM05D006235 ORTHO05D003296 1.6e-58 230.3 247 55.1
Glyma.14G076800 Glycine max HOM05D006235 ORTHO05D003296 2.8e-58 229.6 236 53.4
Aa31LG10G9710 Aethionema arabicum HOM05D006235 ORTHO05D003296 1.1e-57 227.6 245 51.8
BraA08t32549Z Brassica rapa HOM05D006235 ORTHO05D003296 1.8e-57 226.9 240 53.8
VMungo0647G1754 Vigna mungo HOM05D006235 ORTHO05D003296 3.1e-57 226.1 239 53.1
A08p05440 Brassica napus HOM05D006235 ORTHO05D003296 4.0e-57 225.7 240 53.3
Gohir.A05G196101 Gossypium hirsutum HOM05D006235 ORTHO05D003296 8.9e-57 224.6 252 52.4
BcaB02g11343 Brassica carinata HOM05D006235 ORTHO05D003296 1.2e-56 224.2 239 55.2
BcaB04g17481 Brassica carinata HOM05D006235 ORTHO05D003296 1.2e-56 224.2 240 54.2
TPR.G15747 Trifolium pratense HOM05D006235 ORTHO05D003296 2.6e-56 223.0 266 51.5
arahy.Tifrunner.gnm1.ann1.6S3G4W Arachis hypogaea HOM05D006235 ORTHO05D003296 3.4e-56 222.6 266 47.0
arahy.Tifrunner.gnm1.ann1.M9U11V Arachis hypogaea HOM05D006235 ORTHO05D003296 3.4e-56 222.6 266 47.0
BcaC07g37196 Brassica carinata HOM05D006235 ORTHO05D003296 4.4e-56 222.2 250 52.0
Psat6g007000 Pisum sativum HOM05D006235 ORTHO05D003296 4.4e-56 222.2 262 50.8
BolC8t47409H Brassica oleracea HOM05D006235 ORTHO05D003296 5.8e-56 221.9 250 52.0
Lalb_Chr22g0355421 Lupinus albus HOM05D006235 ORTHO05D003296 7.5e-56 221.5 272 47.8
ATR0787G130 Amborella trichopoda HOM05D006235 ORTHO05D003296 1.7e-55 220.3 241 51.5
Glyma.17G249000 Glycine max HOM05D006235 ORTHO05D003296 1.7e-55 220.3 245 50.6
Phvul.001G016000 Phaseolus vulgaris HOM05D006235 ORTHO05D003296 6.4e-55 218.4 240 51.7
Sc26g0003710 Simmondsia chinensis HOM05D006235 ORTHO05D003296 2.7e-53 213.0 239 49.0
Sc26g0003770 Simmondsia chinensis HOM05D006235 ORTHO05D003296 2.7e-53 213.0 239 49.0
A05p21390 Brassica napus HOM05D006235 ORTHO05D003296 4.6e-53 212.2 239 53.1
BraA05t21047Z Brassica rapa HOM05D006235 ORTHO05D003296 4.6e-53 212.2 239 53.1
ClCG08G015290 Citrullus lanatus HOM05D006235 ORTHO05D003296 7.8e-53 211.5 235 52.8
Oeu005368.1 Olea europaea HOM05D006235 ORTHO05D003296 7.8e-53 211.5 258 50.0
Ah.01g019680 Amaranthus hybridus HOM05D006235 ORTHO05D003296 1.7e-52 210.3 240 48.8
BcaC05g27609 Brassica carinata HOM05D006235 ORTHO05D003296 1.6e-50 203.8 239 52.7
C05p35980 Brassica napus HOM05D006235 ORTHO05D003296 1.6e-50 203.8 239 52.7
SEGI_19994 Sequoiadendron giganteum HOM05D006235 ORTHO05D003296 6.2e-50 201.8 243 48.1
BolC5t32323H Brassica oleracea HOM05D006235 ORTHO05D003296 5.8e-48 195.3 239 50.6
Atru.chr1.2828 Acer truncatum HOM05D006235 ORTHO05D003296 3.7e-47 192.6 246 46.7
SMO271G0112 Selaginella moellendorffii HOM05D006235 ORTHO05D003296 4.1e-46 189.1 241 46.5
HPP92_000097 Vanilla planifolia HOM05D006235 ORTHO05D003296 1.0e-44 184.5 260 43.8
Os03g0302000 Oryza sativa ssp. japonica HOM05D006235 ORTHO05D003296 2.5e-43 179.9 235 43.8
Pp3c2_11370 Physcomitrium patens HOM05D006235 ORTHO05D003296 2.5e-43 179.9 234 43.6
Zm00001eb014180 Zea mays HOM05D006235 ORTHO05D003296 9.6e-43 177.9 256 42.2
Mapoly0002s0024 Marchantia polymorpha HOM05D006235 ORTHO05D003296 2.1e-42 176.8 239 44.8
CDE04G1780 Ceratophyllum demersum HOM05D006235 ORTHO05D003296 2.8e-42 176.4 243 44.0
Peaxi162Scf00057g00614 Petunia axillaris HOM05D006235 ORTHO05D003296 1.8e-41 173.7 233 45.9
GSVIVG01009660001 Vitis vinifera HOM05D006235 ORTHO05D003296 7.6e-40 168.3 185 51.9
Atru.chr13.531 Acer truncatum HOM05D006235 ORTHO05D003296 1.4e-38 164.1 235 43.8
Os03g0301950 Oryza sativa ssp. japonica HOM05D006235 ORTHO05D003296 4.2e-38 162.5 258 39.1
AUR62016688 Chenopodium quinoa HOM05D006235 ORTHO05D003296 5.1e-36 155.6 166 51.8
AUR62011372 Chenopodium quinoa HOM05D006235 ORTHO05D003296 2.5e-35 153.3 169 50.9
CDE07G0964 Ceratophyllum demersum HOM05D006235 ORTHO05D003296 1.6e-34 150.6 228 41.2
Aqoxy517s001 Aquilegia oxysepala HOM05D006235 ORTHO05D003296 4.6e-29 132.5 179 41.9
AagrBONN_evm.TU.Sc2ySwM_340.47 Anthoceros agrestis HOM05D006235 ORTHO05D003296 5.6e-27 125.6 234 37.2
C08p05980 Brassica napus HOM05D006235 ORTHO05D003296 4.8e-26 122.5 243 39.5
Cre12.g540500 Chlamydomonas reinhardtii HOM05D006235 ORTHO05D003296 8.1e-26 121.7 235 33.6
Lj2P262T50 Lonicera japonica HOM05D006235 ORTHO05D003296 1.3e-23 114.4 134 47.0
MD02G1189800 Malus domestica HOM05D006235 ORTHO05D003296 6.7e-20 102.1 111 56.8
Aa31LG8G12580 Aethionema arabicum HOM05D006235 ORTHO05D003296 4.8e-18 95.9 79 63.3
Lsat_1_v5_gn_4_121700 Lactuca sativa HOM05D006235 ORTHO05D003296 3.4e-16 89.7 74 60.8
Atru.chr2.1709 Acer truncatum HOM05D006235 ORTHO05D003296 1.4e-14 84.3 78 55.1
HPP92_015114 Vanilla planifolia HOM05D007393 ORTHO05D003296 7.9e-13 78.6 216 28.7
ECA232G0262 Erigeron canadensis HOM05D000853 ORTHO05D000723 1.8e-12 77.4 90 45.6
Pp3c24_12360 Physcomitrium patens HOM05D007393 ORTHO05D003296 5.1e-12 75.9 251 27.1
HanXRQChr16g0508571 Helianthus annuus HOM05D006235 ORTHO05D003296 8.7e-12 75.1 101 46.5
THA.LOC104819449 Tarenaya hassleriana HOM05D007393 ORTHO05D003296 1.9e-11 73.9 233 29.6
PSO063G3575 Papaver somniferum HOM05D007393 ORTHO05D003296 3.3e-11 73.2 239 28.9
Sc10g0002600 Simmondsia chinensis HOM05D007393 ORTHO05D003296 7.4e-11 72.0 233 24.9
DCAR_009585 Daucus carota HOM05D007393 ORTHO05D003296 9.6e-11 71.6 233 26.6
Lj3g0002150 Lotus japonicus HOM05D007393 ORTHO05D003296 1.6e-10 70.9 233 25.3
TPR.G20257 Trifolium pratense HOM05D007393 ORTHO05D003296 2.1e-10 70.5 234 25.2
PSO782G2307 Papaver somniferum HOM05D007393 ORTHO05D003296 3.7e-10 69.7 239 28.9
Peaxi162Scf00241g00016 Petunia axillaris HOM05D007393 ORTHO05D003296 4.8e-10 69.3 239 25.9
CDE04G2691 Ceratophyllum demersum HOM05D007393 ORTHO05D003296 6.3e-10 68.9 235 26.0
Os04g0534600 Oryza sativa ssp. japonica HOM05D007393 ORTHO05D003296 8.2e-10 68.6 233 24.0
Potri.003G108900 Populus trichocarpa HOM05D007393 ORTHO05D003296 8.2e-10 68.6 233 24.9
Manes.06G134500 Manihot esculenta HOM05D007393 ORTHO05D003296 1.4e-09 67.8 236 26.3
Cpa.g.sc55.20 Carica papaya HOM05D007393 ORTHO05D003296 1.8e-09 67.4 237 27.0
Sed0026291 Sechium edule HOM05D007393 ORTHO05D003296 3.1e-09 66.6 236 24.6
SEGI_21258 Sequoiadendron giganteum HOM05D007393 ORTHO05D003296 3.1e-09 66.6 242 26.0
Zm00001eb075550 Zea mays HOM05D007393 ORTHO05D003296 3.1e-09 66.6 202 26.7
Duzib068G1002 Durio zibethinus HOM05D007393 ORTHO05D003296 5.3e-09 65.9 233 24.9
AUR62012298 Chenopodium quinoa HOM05D007393 ORTHO05D003296 6.9e-09 65.5 238 25.2
Glyma.09G224200 Glycine max HOM05D007393 ORTHO05D003296 6.9e-09 65.5 235 25.5
AUR62022937 Chenopodium quinoa HOM05D007393 ORTHO05D003296 1.5e-08 64.3 238 25.2
Prupe.2G276800 Prunus persica HOM05D007393 ORTHO05D003296 1.5e-08 64.3 235 24.3
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 2.0e-08 63.9 247 25.1
Eucgr.K00161 Eucalyptus grandis HOM05D007393 ORTHO05D003296 2.0e-08 63.9 239 23.8
SMO137G0166 Selaginella moellendorffii HOM05D007393 ORTHO05D003296 2.0e-08 63.9 247 25.9
Migut.F01185 Erythranthe guttata HOM05D007393 ORTHO05D003296 2.6e-08 63.5 238 26.9
Lalb_Chr19g0140141 Lupinus albus HOM05D007393 ORTHO05D003296 3.4e-08 63.2 233 24.9
TAR374G1149 Trochodendron aralioides HOM05D007393 ORTHO05D003296 5.8e-08 62.4 234 26.1
Lalb_Chr03g0024251 Lupinus albus HOM05D007393 ORTHO05D003296 7.6e-08 62.0 237 24.9
Thhalv10010697m.g Eutrema salsugineum HOM05D007393 ORTHO05D003296 1.0e-07 61.6 233 26.6
AL5G26650 Arabidopsis lyrata HOM05D007393 ORTHO05D003296 1.3e-07 61.2 233 27.5
Pp3c26_4230 Physcomitrium patens HOM05D007393 ORTHO05D003296 1.3e-07 61.2 247 24.7
CARHR156070 Cardamine hirsuta HOM05D007393 ORTHO05D003296 1.7e-07 60.8 235 25.5
COL.COLO4_14119 Corchorus olitorius HOM05D002424 ORTHO05D002640 2.2e-07 60.5 115 33.0
Psat7g156560 Pisum sativum HOM05D007393 ORTHO05D003296 2.2e-07 60.5 232 23.3
Ciclev10005804m.g Citrus clementina HOM05D007393 ORTHO05D003296 2.9e-07 60.1 236 25.0
EL10Ac2g04889 Beta vulgaris HOM05D007393 ORTHO05D003296 5.0e-07 59.3 239 24.7
Sp5g14450 Schrenkiella parvula HOM05D007393 ORTHO05D003296 5.0e-07 59.3 233 26.2
Aa31LG4G16230 Aethionema arabicum HOM05D007393 ORTHO05D003296 1.1e-06 58.2 233 24.0
BcaB01g00925 Brassica carinata HOM05D007393 ORTHO05D003296 1.1e-06 58.2 233 25.3
AT3G47430 Arabidopsis thaliana HOM05D007393 ORTHO05D003296 1.4e-06 57.8 233 26.2
Carub.0005s1352 Capsella rubella HOM05D007393 ORTHO05D003296 1.4e-06 57.8 232 25.4
BcaC01g01825 Brassica carinata HOM05D007393 ORTHO05D003296 9.3e-06 55.1 233 24.9


User provided reference genes

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