Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 7.2e-108 394.0 216 100.0
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 8.6e-61 237.7 178 77.5
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 1.2e-59 233.8 176 74.4
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 1.9e-55 219.9 179 72.1
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 4.1e-55 218.8 174 72.4
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 3.5e-54 215.7 190 69.5
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 4.6e-54 215.3 178 70.2
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 2.5e-52 209.5 161 74.5
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 3.3e-52 209.1 191 66.5
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 5.6e-52 208.4 179 67.6
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 5.6e-52 208.4 201 63.7
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 7.3e-52 208.0 176 69.9
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 6.2e-51 204.9 188 65.4
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 6.2e-51 204.9 188 65.4
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 8.1e-51 204.5 178 66.9
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 8.1e-51 204.5 184 67.4
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 8.1e-51 204.5 177 66.7
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 8.1e-51 204.5 189 66.7
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 3.1e-50 202.6 180 67.8
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 6.8e-50 201.4 187 65.8
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 2.0e-49 199.9 168 69.6
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 3.4e-49 199.1 174 69.0
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 3.4e-49 199.1 173 67.1
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 3.4e-49 199.1 177 65.5
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 4.4e-49 198.7 181 65.7
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 4.4e-49 198.7 188 63.8
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 5.8e-49 198.4 172 66.9
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 7.6e-49 198.0 177 67.2
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.3e-48 197.2 182 65.4
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 1.3e-48 197.2 182 65.4
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 2.2e-48 196.4 180 65.6
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 2.9e-48 196.1 180 65.6
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 2.9e-48 196.1 180 65.6
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 3.8e-48 195.7 185 65.9
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 3.8e-48 195.7 177 66.7
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 4.9e-48 195.3 168 67.3
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 6.4e-48 194.9 181 65.2
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 8.4e-48 194.5 155 71.6
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 8.4e-48 194.5 180 63.9
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 1.1e-47 194.1 181 64.6
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.4e-47 193.7 180 65.6
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 3.2e-47 192.6 177 63.8
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 4.1e-47 192.2 167 65.3
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 7.1e-47 191.4 191 62.8
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 2.1e-46 189.9 179 62.6
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 7.8e-46 188.0 144 75.0
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 7.8e-46 188.0 168 67.3
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 7.8e-46 188.0 192 63.5
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 2.3e-45 186.4 175 63.4
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 3.0e-45 186.0 169 66.9
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 3.9e-45 185.7 155 70.3
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 3.9e-45 185.7 168 67.3
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 8.6e-45 184.5 175 64.6
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 8.6e-45 184.5 175 63.4
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 1.5e-44 183.7 175 63.4
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 4.3e-44 182.2 177 62.7
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 4.3e-44 182.2 174 63.2
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 7.3e-44 181.4 166 62.0
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.2e-43 180.6 171 62.6
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.2e-43 180.6 171 62.6
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 1.6e-43 180.3 175 62.3
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 1.6e-43 180.3 179 62.0
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.6e-43 180.3 198 60.6
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 2.1e-43 179.9 171 62.6
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 4.7e-43 178.7 174 62.6
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 8.1e-43 177.9 182 60.4
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 8.1e-43 177.9 176 63.1
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.1e-42 177.6 179 61.5
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 1.1e-42 177.6 182 60.4
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 1.4e-42 177.2 183 58.5
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 1.8e-42 176.8 172 59.3
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 1.2e-41 174.1 156 63.5
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 1.5e-41 173.7 178 56.7
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 7.6e-41 171.4 123 78.9
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 9.9e-41 171.0 181 58.0
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 1.3e-40 170.6 190 58.4
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 1.3e-40 170.6 176 61.4
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 3.8e-40 169.1 190 56.8
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 3.8e-40 169.1 188 56.9
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 3.8e-40 169.1 189 59.3
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 6.4e-40 168.3 207 53.6
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 1.1e-39 167.5 180 58.3
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 1.1e-39 167.5 188 56.4
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 1.1e-39 167.5 188 56.4
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 1.1e-39 167.5 145 67.6
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 1.9e-39 166.8 194 56.7
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 2.4e-39 166.4 187 57.8
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 2.4e-39 166.4 174 59.2
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 4.2e-39 165.6 193 56.5
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 4.2e-39 165.6 193 56.5
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 4.2e-39 165.6 138 65.9
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 9.3e-39 164.5 144 68.8
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 9.3e-39 164.5 171 59.6
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 1.2e-38 164.1 122 73.0
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 1.2e-38 164.1 122 73.0
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 1.6e-38 163.7 196 55.6
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 2.1e-38 163.3 189 56.6
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 2.1e-38 163.3 190 56.3
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 2.7e-38 162.9 110 82.7
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 2.7e-38 162.9 199 54.8
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 2.7e-38 162.9 122 72.1
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 3.5e-38 162.5 186 55.9
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 3.5e-38 162.5 186 55.9
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 7.8e-38 161.4 193 55.4
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 5.1e-37 158.7 343 37.3
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 6.6e-37 158.3 115 73.9
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 2.5e-36 156.4 159 59.7
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 3.3e-36 156.0 167 57.5
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 5.3e-34 148.7 103 75.7
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 2.0e-33 146.7 256 43.0
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 1.2e-30 137.5 111 66.7
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 6.7e-29 131.7 190 47.4
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 4.3e-28 129.0 137 56.2
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 1.6e-27 127.1 116 61.2
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 9.9e-25 117.9 165 49.7
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 1.2e-22 110.9 100 60.0
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 2.1e-22 110.2 175 43.4
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 3.5e-22 109.4 145 48.3
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 7.9e-22 108.2 128 48.4
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 5.1e-21 105.5 77 68.8
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 1.8e-18 97.1 114 55.3
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 5.3e-18 95.5 146 47.9
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 1.1e-15 87.8 76 60.5
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 5.5e-15 85.5 104 50.0
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 1.1e-12 77.8 88 47.7
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 5.7e-12 75.5 74 62.2
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.1e-10 71.2 63 63.5
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 2.0e-09 67.0 108 50.0
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 1.2e-06 57.8 42 76.2
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 4.6e-06 55.8 80 46.2


User provided reference genes

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