Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.1e-125 453.4 239 100.0
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 4.1e-96 355.1 235 78.7
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.3e-83 312.8 238 71.0
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.5e-82 310.1 238 70.2
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 4.4e-82 308.5 238 70.2
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 9.8e-82 307.4 237 69.6
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 9.8e-82 307.4 236 69.9
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 1.3e-81 307.0 237 67.9
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 6.3e-81 304.7 265 64.5
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 6.3e-81 304.7 236 69.1
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 5.4e-80 301.6 236 68.6
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 9.2e-80 300.8 237 67.5
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 2.0e-79 299.7 236 68.2
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 8.6e-78 294.3 231 68.8
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 1.1e-77 293.9 252 64.3
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 7.3e-77 291.2 237 65.4
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 2.1e-76 289.7 238 66.0
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 8.0e-76 287.7 237 65.4
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.6e-74 282.7 238 67.2
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 5.8e-74 281.6 255 64.7
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 9.8e-74 280.8 237 64.1
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.2e-73 279.6 239 66.5
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 2.2e-73 279.6 239 66.5
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 6.4e-73 278.1 237 63.7
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 1.1e-72 277.3 240 66.2
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.8e-72 276.6 241 66.0
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 1.8e-72 276.6 237 62.0
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 2.4e-72 276.2 239 66.1
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.4e-72 276.2 237 65.0
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 2.4e-72 276.2 236 63.1
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.2e-71 273.9 236 63.1
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.6e-71 273.5 236 64.4
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 1.6e-71 273.5 239 65.3
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.0e-71 273.1 237 64.1
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.5e-71 272.3 252 60.7
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 3.5e-71 272.3 237 62.4
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 3.5e-71 272.3 239 64.9
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.3e-70 270.4 237 62.4
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 2.3e-70 269.6 241 64.7
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 3.9e-70 268.9 238 62.6
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 3.9e-70 268.9 237 62.9
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 5.0e-70 268.5 236 61.9
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 4.3e-69 265.4 236 60.6
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 4.3e-69 265.4 237 62.0
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 3.6e-68 262.3 237 62.0
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 6.2e-68 261.5 237 58.2
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.1e-67 260.8 238 61.8
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.8e-67 260.0 240 62.1
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.3e-67 259.6 237 59.1
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.3e-67 259.6 238 60.9
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 2.3e-67 259.6 234 60.7
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.3e-67 259.6 238 61.3
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 4.0e-67 258.8 237 62.4
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 6.8e-67 258.1 240 61.7
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 8.9e-67 257.7 240 62.1
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 1.5e-66 256.9 237 60.8
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.0e-66 256.5 236 58.5
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 2.6e-66 256.1 238 59.2
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 3.4e-66 255.8 239 64.4
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.4e-66 255.4 239 60.7
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 9.8e-66 254.2 236 58.1
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 3.7e-65 252.3 237 59.5
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.9e-65 251.9 237 59.5
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 4.9e-65 251.9 236 59.3
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 4.9e-65 251.9 238 58.8
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.1e-64 250.8 237 59.1
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.9e-64 250.0 237 59.5
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 2.4e-64 249.6 237 59.1
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 5.4e-64 248.4 236 58.1
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 7.0e-64 248.1 237 59.1
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 9.2e-64 247.7 236 58.9
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.3e-62 243.8 247 59.5
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.7e-62 243.4 238 56.7
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 2.3e-62 243.0 238 60.1
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 2.3e-62 243.0 237 56.5
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 5.0e-62 241.9 244 57.0
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 6.6e-62 241.5 238 56.7
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 3.3e-61 239.2 236 58.1
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 5.6e-61 238.4 239 55.2
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 9.5e-61 237.7 238 59.7
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.2e-60 237.3 236 59.7
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 1.6e-60 236.9 238 57.6
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 3.6e-60 235.7 239 59.8
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 3.6e-60 235.7 239 59.8
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 3.6e-60 235.7 237 56.1
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 4.7e-60 235.3 236 57.2
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 4.7e-60 235.3 216 59.3
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 6.2e-60 235.0 238 55.0
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.1e-59 234.2 230 60.0
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.4e-59 233.8 235 57.0
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.8e-59 233.4 243 56.8
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 2.3e-59 233.0 239 55.2
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 4.0e-59 232.3 236 55.9
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.2e-58 230.7 240 55.8
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 1.5e-58 230.3 239 55.6
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 2.6e-58 229.6 248 57.3
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 2.6e-58 229.6 248 57.3
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 2.6e-58 229.6 241 57.7
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.4e-58 229.2 236 53.8
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.3e-57 227.3 237 56.5
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 1.7e-57 226.9 237 55.7
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 2.2e-57 226.5 236 54.7
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 3.7e-57 225.7 238 56.7
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 3.7e-57 225.7 241 53.5
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 3.7e-57 225.7 244 55.3
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.1e-56 224.2 231 58.9
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.4e-56 223.8 238 55.0
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.9e-56 223.4 237 55.7
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 2.4e-56 223.0 248 54.8
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.4e-56 223.0 239 57.3
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 9.2e-56 221.1 237 56.1
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.0e-54 217.6 240 51.2
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 5.1e-54 215.3 237 53.6
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 6.6e-54 214.9 246 54.9
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 9.5e-53 211.1 161 71.4
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 1.2e-52 210.7 239 56.1
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.8e-51 206.8 239 51.9
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.0e-51 205.7 250 49.6
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.2e-50 204.1 248 51.6
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.4e-50 202.6 250 49.6
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 7.1e-48 194.9 237 50.2
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 4.6e-47 192.2 234 53.4
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 4.6e-47 192.2 234 53.4
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 5.1e-46 188.7 190 56.3
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 8.1e-44 181.4 190 55.3
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.1e-43 181.0 249 45.8
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.2e-42 177.6 237 47.3
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 2.0e-42 176.8 209 54.1
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 3.8e-41 172.6 237 46.4
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.4e-40 170.6 172 58.1
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 5.1e-38 162.2 141 64.5
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.8e-35 153.7 140 59.3
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 9.9e-34 147.9 141 58.9
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 5.4e-32 142.1 154 52.6
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 7.9e-31 138.3 140 55.0
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.5e-29 133.3 122 58.2
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.7e-28 129.4 160 49.4
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.4e-26 122.9 155 49.0
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.7e-25 120.6 130 53.8
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 7.9e-23 111.7 74 75.7
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 3.0e-22 109.8 126 52.4
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.9e-22 109.4 96 62.5
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 1.0e-17 94.7 249 34.1
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.3e-17 94.4 116 49.1
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 7.4e-13 78.6 87 55.2
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.4e-11 74.3 90 48.9
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.1e-11 73.2 254 29.1
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.5e-10 70.9 54 70.4
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 3.4e-10 69.7 54 68.5
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 1.9e-08 63.9 46 67.4


User provided reference genes

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