Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 2.6e-53 211.8 113 100.0
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 5.9e-53 210.7 113 99.1
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 9.8e-32 140.2 113 70.8
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.9e-27 125.9 112 67.0
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 6.1e-26 120.9 113 61.9
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 5.7e-24 114.4 114 63.2
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 9.2e-22 107.1 113 61.1
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 1.6e-21 106.3 114 58.8
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 2.7e-21 105.5 115 57.4
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 2.7e-21 105.5 115 57.4
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 6.6e-20 100.9 113 55.8
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 8.6e-20 100.5 114 58.8
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 8.6e-20 100.5 114 59.6
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.1e-19 100.1 114 56.1
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 1.1e-19 100.1 115 55.7
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 1.5e-19 99.8 114 56.1
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 1.9e-19 99.4 114 57.0
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 4.3e-19 98.2 114 54.4
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 4.3e-19 98.2 113 58.4
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 4.3e-19 98.2 114 54.4
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 9.5e-19 97.1 115 53.0
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 1.2e-18 96.7 115 55.7
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 1.6e-18 96.3 114 53.5
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 1.6e-18 96.3 114 53.5
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 1.6e-18 96.3 113 55.8
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.6e-18 96.3 114 57.0
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 1.6e-18 96.3 114 58.8
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 2.1e-18 95.9 114 53.5
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 2.1e-18 95.9 114 54.4
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 2.8e-18 95.5 113 52.2
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 2.8e-18 95.5 113 52.2
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.8e-18 95.5 115 54.8
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 1.1e-17 93.6 115 56.5
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 1.4e-17 93.2 112 55.4
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 1.8e-17 92.8 115 56.5
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.8e-17 92.8 112 54.5
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 4.0e-17 91.7 99 60.6
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 4.0e-17 91.7 118 56.8
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 4.0e-17 91.7 115 55.7
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 6.8e-17 90.9 113 54.0
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 6.8e-17 90.9 117 54.7
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 6.8e-17 90.9 112 53.6
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 6.8e-17 90.9 115 54.8
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 8.9e-17 90.5 115 53.0
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 8.9e-17 90.5 113 54.0
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 1.2e-16 90.1 115 53.9
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 1.5e-16 89.7 114 54.4
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.5e-16 89.7 115 53.0
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.0e-16 89.4 117 55.6
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 2.0e-16 89.4 115 52.2
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 2.6e-16 89.0 116 54.3
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.6e-16 89.0 116 54.3
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 3.4e-16 88.6 113 52.2
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 4.4e-16 88.2 113 51.3
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 5.8e-16 87.8 120 52.5
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 7.5e-16 87.4 115 50.4
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.3e-15 86.7 113 53.1
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 2.2e-15 85.9 113 51.3
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 2.2e-15 85.9 114 50.9
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.2e-15 85.9 116 52.6
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 2.2e-15 85.9 114 50.0
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 3.7e-15 85.1 115 50.4
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 4.9e-15 84.7 113 52.2
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 1.1e-14 83.6 110 51.8
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 1.1e-14 83.6 115 53.0
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 1.4e-14 83.2 116 50.9
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 2.4e-14 82.4 114 48.2
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 3.2e-14 82.0 114 47.4
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 3.2e-14 82.0 113 49.6
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 5.4e-14 81.3 120 48.3
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 7.0e-14 80.9 115 51.3
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 7.0e-14 80.9 113 48.7
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 7.0e-14 80.9 116 47.4
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 7.0e-14 80.9 116 48.3
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 9.2e-14 80.5 114 53.5
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.6e-13 79.7 114 46.5
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 2.7e-13 79.0 114 51.8
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 4.6e-13 78.2 115 50.4
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 6.0e-13 77.8 115 47.8
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 7.8e-13 77.4 113 45.1
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.7e-12 76.3 115 45.2
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.7e-12 76.3 115 45.2
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 8.6e-12 73.9 114 47.4
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 3.3e-11 72.0 113 46.0
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 4.3e-11 71.6 115 46.1
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.2e-10 70.1 79 54.4
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 1.2e-10 70.1 55 70.9
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.2e-10 70.1 81 55.6
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 2.1e-10 69.3 120 45.0
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 2.8e-10 68.9 79 55.7
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 4.7e-10 68.2 114 43.9
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.1e-09 67.0 123 43.1
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 1.1e-09 67.0 112 43.8
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 3.1e-09 65.5 117 44.4
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 5.2e-09 64.7 116 42.2
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 1.2e-08 63.5 112 43.8
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 1.4e-06 56.6 113 39.8
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.4e-06 55.8 112 42.9


User provided reference genes

Program Settings