Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 6.3e-209 730.7 417 100.0
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 8.7e-118 427.9 418 61.2
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 2.4e-115 419.9 421 59.4
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 1.5e-109 400.6 419 62.5
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 8.4e-105 384.8 461 57.5
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 5.5e-104 382.1 414 58.2
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 7.9e-103 378.3 458 55.0
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 5.6e-101 372.1 434 56.5
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 1.7e-97 360.5 434 54.4
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 8.4e-97 358.2 445 54.6
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 1.2e-95 354.4 444 55.0
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 7.9e-95 351.7 429 55.0
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 1.3e-94 350.9 443 54.6
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 2.8e-92 343.2 431 57.3
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 1.4e-91 340.9 432 55.6
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 1.2e-90 337.8 425 54.8
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 4.5e-90 335.9 404 52.7
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 4.5e-90 335.9 404 52.7
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 1.1e-88 331.3 424 54.5
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 3.2e-88 329.7 413 57.9
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 1.6e-87 327.4 440 55.9
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 2.7e-87 326.6 446 50.4
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 1.0e-86 324.7 434 50.5
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 1.0e-86 324.7 439 49.7
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 2.3e-86 323.6 423 55.1
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 3.0e-86 323.2 425 52.5
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 1.5e-85 320.9 470 50.4
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 2.2e-84 317.0 424 54.7
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 8.2e-84 315.1 429 52.9
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 1.4e-83 314.3 450 55.6
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 1.8e-83 313.9 426 51.6
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 4.1e-83 312.8 445 47.9
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 6.9e-83 312.0 411 55.7
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 1.5e-82 310.8 422 48.3
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 2.0e-82 310.5 429 49.7
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 3.4e-82 309.7 411 51.3
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 2.2e-81 307.0 425 50.6
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 2.9e-81 306.6 412 51.7
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 5.0e-81 305.8 389 53.0
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 2.5e-80 303.5 426 52.6
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 1.2e-79 301.2 411 54.3
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 1.6e-79 300.8 429 49.9
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 2.1e-79 300.4 427 46.4
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 3.6e-79 299.7 429 49.2
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 3.6e-79 299.7 425 50.6
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 4.6e-79 299.3 429 50.3
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 7.9e-79 298.5 430 48.1
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 1.4e-78 297.7 411 54.0
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 2.3e-78 297.0 411 54.0
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 3.0e-78 296.6 382 55.2
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 3.9e-78 296.2 447 47.9
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 6.7e-78 295.4 445 50.1
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 1.1e-77 294.7 468 46.8
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 1.1e-77 294.7 404 50.7
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 4.4e-77 292.7 436 49.1
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 4.4e-77 292.7 440 47.5
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 4.4e-77 292.7 454 49.6
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 4.4e-77 292.7 419 50.8
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 5.7e-77 292.4 379 50.9
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 7.4e-77 292.0 441 47.4
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 4.8e-76 289.3 441 46.3
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 6.3e-76 288.9 427 50.4
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 3.1e-75 286.6 480 45.6
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 3.1e-75 286.6 409 50.1
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 5.3e-75 285.8 422 47.4
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 9.1e-75 285.0 430 48.6
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 2.6e-74 283.5 427 50.1
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.4e-74 283.1 426 50.0
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 3.4e-74 283.1 436 46.6
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.0e-73 281.6 427 49.6
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 6.5e-73 278.9 434 44.9
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.1e-72 278.1 427 49.2
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.5e-72 276.9 427 48.9
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.2e-72 276.6 426 49.8
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 7.2e-72 275.4 427 47.8
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 4.7e-71 272.7 440 46.8
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 1.1e-69 268.1 354 54.5
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 1.5e-69 267.7 421 48.0
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 3.7e-68 263.1 395 45.8
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 8.2e-68 261.9 322 49.7
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 1.4e-67 261.2 425 42.4
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 1.8e-67 260.8 434 45.4
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 9.1e-67 258.5 200 72.0
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 5.9e-66 255.8 200 71.0
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 7.7e-66 255.4 431 45.2
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 1.0e-65 255.0 444 45.9
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 1.7e-65 254.2 444 45.7
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 2.2e-65 253.8 459 44.9
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 6.5e-65 252.3 341 47.5
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 1.2e-63 248.1 344 48.0
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 2.7e-63 246.9 440 44.3
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 2.7e-63 246.9 189 69.3
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 3.0e-62 243.4 277 55.6
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 8.2e-60 235.3 439 43.5
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 1.1e-59 235.0 177 72.3
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 1.8e-59 234.2 444 43.5
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 2.4e-59 233.8 439 43.3
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 1.6e-58 231.1 463 40.4
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 2.7e-58 230.3 466 39.1
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 3.8e-57 226.5 422 40.5
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 1.5e-56 224.6 172 70.3
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 1.5e-56 224.6 477 38.8
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 2.5e-56 223.8 351 50.4
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 3.2e-56 223.4 349 50.1
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 5.5e-56 222.6 462 39.4
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 5.5e-56 222.6 417 38.1
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 9.4e-56 221.9 471 40.3
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 2.1e-55 220.7 482 38.6
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 5.2e-54 216.1 475 39.6
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 1.2e-53 214.9 171 66.1
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 4.1e-51 206.5 416 41.6
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 5.4e-51 206.1 171 64.9
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 7.0e-51 205.7 465 43.0
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 7.0e-51 205.7 171 63.7
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 5.9e-50 202.6 170 64.7
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 5.9e-50 202.6 170 64.7
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 3.8e-49 199.9 297 43.1
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 6.5e-49 199.1 366 44.8
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 5.2e-46 189.5 454 41.0
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 1.7e-44 184.5 143 69.2
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 1.8e-43 181.0 167 58.1
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 1.2e-42 178.3 188 52.7
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 2.9e-41 173.7 422 36.3
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 6.6e-41 172.6 182 51.6
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 2.1e-39 167.5 167 58.7
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 8.0e-39 165.6 333 37.5
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 6.4e-36 156.0 127 64.6
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 4.6e-34 149.8 294 38.1
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 9.9e-21 105.5 180 42.8
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 4.9e-20 103.2 75 70.7
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.3e-17 95.1 88 60.2
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 2.3e-17 94.4 111 45.0
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 3.9e-17 93.6 88 60.2
CSS0003747 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 4.3e-16 90.1 65 70.8
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 7.3e-16 89.4 79 59.5
ECA238G1972 Erigeron canadensis HOM05D005186 ORTHO05D006278 5.2e-14 83.2 63 69.8
Nn3g18746 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.7e-12 78.2 66 59.1
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 2.7e-10 70.9 180 30.0
Sabra14G0043300 Salix brachista HOM05D005186 ORTHO05D006278 3.0e-09 67.4 70 51.4
FAN03G1572 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.9e-09 67.0 47 70.2
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 5.1e-09 66.6 103 41.7
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 5.6e-08 63.2 137 31.4
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 7.3e-08 62.8 101 34.7
Atru.chr1.1456 Acer truncatum HOM05D005186 ORTHO05D006278 1.2e-07 62.0 74 47.3
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 6.2e-07 59.7 103 40.8
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 8.1e-07 59.3 104 35.6
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 8.1e-07 59.3 94 45.7
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 1.4e-06 58.5 103 35.9
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 1.8e-06 58.2 99 37.4
Manes.01G250800 Manihot esculenta HOM05D006269 ORTHO05D001487 1.8e-06 58.2 171 26.9
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 3.1e-06 57.4 103 37.9
SalBow5G2113 Salvia bowleyana HOM05D006269 ORTHO05D001487 4.0e-06 57.0 139 27.3
AagrBONN_evm.TU.Sc2ySwM_368.336 Anthoceros agrestis HOM05D006269 ORTHO05D001487 5.2e-06 56.6 157 28.0
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 5.2e-06 56.6 122 34.4
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 5.2e-06 56.6 122 34.4
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 9.0e-06 55.8 103 35.9
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 9.0e-06 55.8 101 30.7
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 9.0e-06 55.8 107 34.6
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 9.0e-06 55.8 114 29.8


User provided reference genes

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