Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 4.7e-64 247.7 121 100.0
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.9e-12 76.3 48 70.8
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 4.1e-12 75.1 86 48.8
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.2e-11 73.6 97 44.3
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.6e-11 73.2 97 44.3
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.7e-10 69.7 64 54.7
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.7e-10 69.7 40 75.0
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.7e-10 69.7 50 64.0
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 2.3e-10 69.3 36 86.1
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 3.0e-10 68.9 76 48.7
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 5.1e-10 68.2 42 73.8
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 6.6e-10 67.8 37 78.4
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 6.6e-10 67.8 37 83.8
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 8.6e-10 67.4 60 55.0
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 8.6e-10 67.4 48 64.6
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 1.5e-09 66.6 46 65.2
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.9e-09 66.2 41 68.3
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.9e-09 66.2 48 64.6
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.3e-09 65.5 53 66.0
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 4.3e-09 65.1 38 73.7
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 5.6e-09 64.7 70 48.6
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 5.6e-09 64.7 41 68.3
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 7.3e-09 64.3 45 68.9
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 7.3e-09 64.3 38 71.1
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 9.5e-09 63.9 38 73.7
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 9.5e-09 63.9 42 71.4
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 9.5e-09 63.9 62 50.0
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 9.5e-09 63.9 78 53.8
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.2e-08 63.5 58 56.9
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 1.2e-08 63.5 37 75.7
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 1.2e-08 63.5 59 54.2
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.6e-08 63.2 47 63.8
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.6e-08 63.2 35 77.1
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.1e-08 62.8 40 70.0
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.1e-08 62.8 47 61.7
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 2.1e-08 62.8 37 75.7
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 2.8e-08 62.4 48 60.4
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 2.8e-08 62.4 48 60.4
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 2.8e-08 62.4 35 77.1
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 2.8e-08 62.4 45 60.0
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 3.6e-08 62.0 53 54.7
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 3.6e-08 62.0 35 77.1
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 3.6e-08 62.0 51 58.8
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 3.6e-08 62.0 41 68.3
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 3.6e-08 62.0 37 73.0
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 3.6e-08 62.0 79 45.6
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 4.7e-08 61.6 66 53.0
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 4.7e-08 61.6 47 59.6
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 4.7e-08 61.6 38 65.8
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 6.2e-08 61.2 51 56.9
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 6.2e-08 61.2 36 72.2
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 8.1e-08 60.8 36 75.0
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 8.1e-08 60.8 33 78.8
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 8.1e-08 60.8 54 55.6
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 8.1e-08 60.8 36 75.0
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 8.1e-08 60.8 38 71.1
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 8.1e-08 60.8 65 46.2
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 8.1e-08 60.8 36 75.0
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 8.1e-08 60.8 32 78.1
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.1e-07 60.5 45 62.2
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.1e-07 60.5 42 61.9
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.1e-07 60.5 50 56.0
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 1.1e-07 60.5 37 67.6
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 1.1e-07 60.5 37 73.0
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.1e-07 60.5 37 70.3
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.1e-07 60.5 40 65.0
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.4e-07 60.1 77 44.2
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 2.3e-07 59.3 54 53.7
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.3e-07 59.3 35 74.3
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 2.3e-07 59.3 37 64.9
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 3.1e-07 58.9 54 53.7
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 3.1e-07 58.9 36 72.2
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 4.0e-07 58.5 56 53.6
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 4.0e-07 58.5 70 50.0
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 4.0e-07 58.5 98 39.8
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 4.0e-07 58.5 38 68.4
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 5.2e-07 58.2 54 51.9
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 6.8e-07 57.8 41 63.4
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 6.8e-07 57.8 36 72.2
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 8.9e-07 57.4 35 71.4
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 8.9e-07 57.4 38 68.4
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 8.9e-07 57.4 42 61.9
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 1.2e-06 57.0 36 66.7
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.2e-06 57.0 70 47.1
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.2e-06 57.0 37 67.6
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.2e-06 57.0 34 73.5
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 1.5e-06 56.6 36 66.7
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.0e-06 56.2 56 51.8
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 3.4e-06 55.5 38 60.5
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 3.4e-06 55.5 36 63.9
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 3.4e-06 55.5 41 63.4
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 7.6e-06 54.3 36 66.7
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 9.9e-06 53.9 38 63.2
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 9.9e-06 53.9 36 63.9
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 9.9e-06 53.9 36 63.9


User provided reference genes

Program Settings