Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 2129.4 1073 100.0
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1633.6 1012 81.7
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1558.5 1013 78.5
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1529.6 1010 76.5
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1411.4 1014 70.0
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1409.4 998 71.9
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1392.9 1015 69.2
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1384.0 1001 69.3
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1375.9 1014 67.6
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1358.6 1014 66.8
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1355.9 998 68.6
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1347.0 1014 66.7
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1346.3 1014 67.4
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1344.3 1014 66.3
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1343.2 1008 67.1
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1342.4 1014 67.0
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1340.5 1015 67.2
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1340.5 1015 66.8
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1337.8 1017 66.9
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1337.0 1023 66.8
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1335.1 989 67.3
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1333.5 1014 66.7
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1332.4 1012 66.7
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1331.6 1063 64.4
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1330.5 1015 66.0
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1324.7 1079 63.5
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1324.3 1015 65.8
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1323.5 1014 66.0
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1318.1 1015 65.5
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1318.1 1020 65.3
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1316.6 1002 66.2
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1312.7 1013 65.5
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1309.7 1001 65.9
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1304.3 1034 64.8
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1296.6 1014 64.7
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1294.6 1015 64.5
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1281.2 1015 64.5
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1277.7 1015 65.3
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1276.9 1018 64.2
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1273.5 1015 63.5
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1273.1 1016 63.6
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1269.2 1018 63.6
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1267.3 1015 62.0
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1266.1 1015 61.9
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1255.0 1077 60.0
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1247.3 1020 61.9
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1246.9 1014 62.4
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1245.7 1010 63.2
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1245.3 1012 62.4
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1243.4 1013 64.0
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1235.7 1016 60.5
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1231.9 1015 61.8
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1231.1 1015 61.5
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1230.7 1015 61.0
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1228.0 1020 61.2
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1225.3 1016 60.5
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1223.0 1020 61.5
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1208.4 1016 60.7
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1208.0 1016 61.2
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1208.0 1019 61.0
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1205.3 1013 61.9
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1201.0 1017 59.8
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1201.0 1016 59.5
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1196.0 1017 60.0
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1195.3 1017 60.0
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1181.8 1017 59.8
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1180.2 1013 58.5
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1175.2 1016 59.2
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1173.7 1014 60.0
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1171.4 1016 58.5
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1171.0 1013 58.4
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1171.0 1013 58.4
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1169.8 1013 58.3
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1169.8 1014 59.5
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1169.1 1015 59.0
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1168.7 1013 58.0
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1156.0 1026 58.3
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1120.1 1015 56.9
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1112.1 783 71.4
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1100.9 1017 56.1
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1085.1 985 57.7
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 2.9e-311 1072.0 1017 55.7
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 1.2e-309 1066.6 1019 54.1
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 3.6e-309 1065.1 797 68.4
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 1.3e-306 1056.6 1019 54.1
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 3.2e-305 1052.0 783 69.0
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 6.4e-274 948.0 694 68.0
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 5.3e-268 928.3 595 77.8
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 6.9e-268 927.9 977 50.6
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.1e-264 916.4 612 74.2
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 1.3e-239 833.9 751 55.5
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 1.6e-237 827.0 865 49.9
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 8.5e-234 814.7 778 53.6
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-233 813.9 1030 45.1
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 2.0e-230 803.5 1032 44.9
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 8.2e-229 798.1 991 45.6
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.5e-227 793.9 1011 45.2
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 6.8e-207 725.3 505 72.1
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 5.9e-203 712.2 505 71.7
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 2.1e-192 677.2 557 62.3
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 2.3e-191 673.7 512 65.0
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 3.3e-185 653.3 464 69.0
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.4e-180 637.9 528 64.4
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 7.0e-180 635.6 1046 37.6
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 4.3e-177 626.3 512 62.7
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.6e-176 624.4 573 59.7
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 2.3e-175 620.5 454 70.0
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 3.1e-175 620.2 435 72.4
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 6.4e-173 612.5 1036 38.7
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.0e-162 578.6 421 67.7
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 3.4e-158 563.5 1022 35.1
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 3.9e-146 523.5 537 53.6
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.1e-132 478.8 631 42.8
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 1.8e-111 408.3 259 81.9
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 3.1e-111 407.5 797 31.7
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.1e-108 399.1 424 50.9
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.0e-106 392.5 254 75.6
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 5.5e-100 370.2 238 78.6
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 2.8e-96 357.8 451 47.0
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 8.2e-96 356.3 333 55.6
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 5.0e-93 347.1 320 56.9
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.5e-92 344.7 296 58.8
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.2e-92 344.4 319 55.8
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 4.6e-54 217.6 390 39.5
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 7.8e-54 216.9 417 35.7
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 5.1e-53 214.2 417 35.5
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 3.0e-45 188.3 110 85.5
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 4.3e-44 184.5 165 61.2
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 4.3e-44 184.5 165 61.2
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 1.4e-42 179.5 706 25.9
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 1.2e-41 176.4 802 25.3
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 3.5e-38 164.9 229 43.7
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 2.3e-37 162.2 421 32.8
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 7.3e-36 157.1 417 31.9
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 3.4e-33 148.3 309 35.3
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 5.4e-31 141.0 155 51.6
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 2.7e-30 138.7 400 33.0
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 1.3e-29 136.3 118 63.6
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 1.9e-28 132.5 162 48.8
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 7.4e-28 130.6 121 62.0
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 3.1e-26 125.2 261 30.7
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 1.3e-24 119.8 76 80.3
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 1.9e-20 105.9 84 61.9
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 8.2e-19 100.5 90 53.3
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 4.0e-18 98.2 208 33.2
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 1.7e-16 92.8 404 23.8
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 3.8e-16 91.7 60 76.7
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 1.4e-15 89.7 162 32.7
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 1.2e-14 86.7 51 74.5
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 1.3e-13 83.2 46 84.8
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 3.3e-12 78.6 69 62.3
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.3e-11 76.6 49 67.3
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-09 70.1 106 41.5
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 3.2e-07 62.0 92 38.0
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 4.6e-06 58.2 104 38.5


User provided reference genes

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