Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 2.6e-186 655.2 321 100.0
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.9e-152 542.7 321 81.9
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.3e-150 536.6 321 81.6
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 4.4e-138 495.0 321 77.6
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.8e-137 491.9 323 74.6
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.1e-136 490.3 318 75.2
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.4e-136 490.0 323 74.0
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 1.9e-136 489.6 320 74.4
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 7.1e-136 487.6 323 74.6
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 2.1e-135 486.1 322 73.0
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 4.6e-135 485.0 351 69.8
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 1.3e-134 483.4 330 74.2
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.5e-133 479.9 336 71.7
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 4.3e-133 478.4 320 73.1
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 1.3e-132 476.9 318 73.3
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 6.2e-132 474.6 337 71.2
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.1e-131 473.8 324 72.2
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.8e-131 473.0 319 75.2
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 2.4e-131 472.6 327 71.9
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 5.3e-131 471.5 316 72.8
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 5.3e-131 471.5 318 72.3
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 5.3e-131 471.5 318 72.3
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 6.9e-131 471.1 321 72.3
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 9.0e-131 470.7 321 71.3
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.5e-130 469.9 292 76.4
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.5e-130 469.9 316 72.8
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.5e-130 469.9 327 70.0
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 2.0e-130 469.5 326 71.2
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 2.0e-130 469.5 318 72.3
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 2.0e-130 469.5 319 73.4
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.6e-130 469.2 337 68.8
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.6e-130 469.2 265 83.4
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.4e-130 468.8 328 71.0
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 3.4e-130 468.8 318 72.0
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 5.8e-130 468.0 321 71.7
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 7.6e-130 467.6 265 83.0
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 7.6e-130 467.6 265 83.4
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 9.9e-130 467.2 336 68.8
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 9.9e-130 467.2 335 71.0
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 1.3e-129 466.8 265 83.4
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.7e-129 466.5 265 83.0
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 2.2e-129 466.1 326 70.2
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 4.9e-129 464.9 277 78.3
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.9e-129 464.9 336 68.5
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.9e-129 464.9 336 68.5
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 4.9e-129 464.9 324 70.7
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 6.4e-129 464.5 318 72.0
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 8.4e-129 464.2 349 68.2
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 8.4e-129 464.2 326 70.9
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.4e-128 463.4 318 71.7
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.4e-128 463.4 337 70.0
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 1.4e-128 463.4 320 70.9
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.9e-128 463.0 337 70.0
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.9e-128 463.0 327 70.6
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 2.4e-128 462.6 319 70.8
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 2.4e-128 462.6 334 68.0
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.4e-128 462.6 323 70.3
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 7.1e-128 461.1 350 68.6
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 9.3e-128 460.7 345 68.4
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 9.3e-128 460.7 322 71.1
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 9.3e-128 460.7 265 82.3
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.2e-127 460.3 318 71.1
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.2e-127 460.3 284 78.5
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.6e-127 459.9 319 70.5
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.6e-127 459.9 258 82.9
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.6e-127 459.9 324 71.6
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 2.1e-127 459.5 258 82.9
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 2.1e-127 459.5 334 68.0
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 2.1e-127 459.5 324 69.8
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 2.7e-127 459.1 339 67.3
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 2.7e-127 459.1 333 68.2
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 3.5e-127 458.8 286 76.6
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.5e-127 458.8 337 67.7
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 4.6e-127 458.4 318 70.1
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 4.6e-127 458.4 318 70.1
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 6.0e-127 458.0 294 75.5
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 6.0e-127 458.0 258 82.6
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.3e-126 456.8 284 77.8
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.3e-126 456.8 305 72.8
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.8e-126 456.4 326 69.0
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 3.0e-126 455.7 265 80.4
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 3.0e-126 455.7 334 69.5
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 3.0e-126 455.7 327 69.4
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 5.1e-126 454.9 335 68.7
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 5.1e-126 454.9 323 69.0
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 6.7e-126 454.5 327 69.1
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 1.5e-125 453.4 322 70.2
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.5e-125 453.4 318 69.8
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 4.3e-125 451.8 264 81.4
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 5.6e-125 451.4 326 68.7
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 5.6e-125 451.4 323 68.7
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 7.4e-125 451.1 275 76.7
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 9.6e-125 450.7 285 75.1
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 9.6e-125 450.7 348 65.8
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 1.3e-124 450.3 284 75.7
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 1.3e-124 450.3 326 68.7
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.6e-124 449.9 265 78.5
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 3.7e-124 448.7 323 69.0
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 4.8e-124 448.4 263 78.7
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 6.2e-124 448.0 265 78.5
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 8.1e-124 447.6 288 74.0
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.1e-123 447.2 273 77.3
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.1e-123 447.2 323 69.3
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.4e-123 446.0 258 80.6
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 2.4e-123 446.0 349 65.3
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 6.9e-123 444.5 318 67.0
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 2.0e-122 443.0 318 67.6
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 2.6e-122 442.6 318 67.6
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 2.6e-122 442.6 321 65.7
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 4.5e-122 441.8 293 72.0
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 9.3e-120 434.1 242 82.6
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.2e-119 433.7 274 76.3
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 2.1e-119 433.0 313 67.7
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 6.0e-119 431.4 336 66.7
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.3e-118 429.5 318 66.4
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 1.9e-117 426.4 242 82.6
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 8.4e-113 411.0 233 82.8
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 6.7e-110 401.4 260 74.2
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 9.7e-109 397.5 268 70.1
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.6e-108 396.7 270 69.6
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 2.8e-108 396.0 247 78.9
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.8e-107 393.3 217 83.4
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.3e-107 391.7 311 63.3
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 9.0e-107 391.0 221 82.4
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 7.7e-106 387.9 221 82.8
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.2e-105 386.3 328 61.3
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 3.8e-105 385.6 214 83.2
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.4e-104 383.6 217 80.2
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 7.2e-104 381.3 220 80.9
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 5.7e-101 371.7 268 67.5
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 1.8e-99 366.7 208 83.2
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 1.8e-99 366.7 296 65.2
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 4.4e-93 345.5 218 72.5
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.8e-91 340.1 317 55.2
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.7e-84 317.0 323 53.6
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 9.4e-80 301.2 214 69.6
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 4.0e-78 295.8 284 52.8
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 7.7e-74 281.6 157 82.8
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.1e-72 277.7 152 83.6
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 8.0e-71 271.6 195 68.2
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.2e-69 267.7 203 67.0
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 7.5e-69 265.0 234 57.3
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 6.3e-68 261.9 218 63.3
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 9.1e-67 258.1 149 79.2
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.6e-63 247.3 217 60.4
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.6e-55 220.7 129 77.5
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.4e-51 205.7 147 66.7
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 1.7e-41 174.1 174 54.0
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 2.1e-18 97.4 84 59.5
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 2.7e-18 97.1 99 58.6
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 1.3e-15 88.2 100 48.0
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 9.3e-11 72.0 98 45.9
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 2.7e-10 70.5 49 63.3


User provided reference genes

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