Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12554 Avicennia marina HOM05D008098 ORTHO05D009893 1.5e-59 232.6 117 100.0
MSTRG.17457 Avicennia marina HOM05D008098 ORTHO05D009893 3.8e-39 164.9 116 72.4
Migut.D00327 Erythranthe guttata HOM05D008098 ORTHO05D009893 3.1e-33 145.2 118 66.1
MSTRG.18252 Avicennia marina HOM05D008098 ORTHO05D009893 9.8e-27 123.6 116 56.0
SalBow6G1276 Salvia bowleyana HOM05D008098 ORTHO05D009893 5.2e-20 101.3 113 47.8
SGA_v2.0_scaffold1G00510 Striga asiatica HOM05D008098 ORTHO05D009893 2.6e-19 99.0 118 48.3
SalBow4G2107 Salvia bowleyana HOM05D008098 ORTHO05D009893 1.1e-17 93.6 92 52.2
Dinv34781 Davidia involucrata HOM05D008098 ORTHO05D009893 2.7e-16 89.0 137 43.1
Oeu023884.1 Olea europaea HOM05D008098 ORTHO05D009893 7.8e-16 87.4 122 42.6
Lj2A1168T22 Lonicera japonica HOM05D008098 ORTHO05D009893 3.9e-15 85.1 141 41.1
Lj9A530T23 Lonicera japonica HOM05D008098 ORTHO05D009893 3.9e-15 85.1 141 41.1
GSVIVG01001187001 Vitis vinifera HOM05D008098 ORTHO05D009893 8.6e-15 84.0 146 36.3
CSS0044396 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 3.6e-13 78.6 131 39.7
Actinidia00786 Actinidia chinensis HOM05D008098 ORTHO05D009893 6.8e-12 74.3 113 40.7
PGR044G2144 Punica granatum HOM05D008098 ORTHO05D009893 1.2e-11 73.6 124 41.9
CSS0035580 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 1.5e-11 73.2 132 39.4
TAR636G3050 Trochodendron aralioides HOM05D008098 ORTHO05D009893 3.4e-11 72.0 85 41.2
Rhsim13G0027200 Rhododendron simsii HOM05D008098 ORTHO05D009893 5.8e-11 71.2 130 40.8
Dinv44560 Davidia involucrata HOM05D008098 ORTHO05D009893 7.5e-11 70.9 119 37.8
Haze_04677 Corylus avellana HOM05D008098 ORTHO05D009893 9.9e-11 70.5 69 44.9
Dinv14021 Davidia involucrata HOM05D008098 ORTHO05D009893 2.2e-10 69.3 90 41.1
unitig_699.g19312 Utricularia gibba HOM05D008098 ORTHO05D009893 2.9e-10 68.9 69 47.8
Hund02840 Selenicereus undatus HOM05D008098 ORTHO05D009893 3.7e-10 68.6 130 33.8
TAR260G0007 Trochodendron aralioides HOM05D008098 ORTHO05D009893 6.4e-10 67.8 76 44.7
TAR633G0062 Trochodendron aralioides HOM05D008098 ORTHO05D009893 6.4e-10 67.8 77 39.0
DCAR_005861 Daucus carota HOM05D008098 ORTHO05D009893 1.1e-09 67.0 127 32.3
TAR633G1927 Trochodendron aralioides HOM05D008098 ORTHO05D009893 1.1e-09 67.0 77 39.0
Cc09_g05460 Coffea canephora HOM05D008098 ORTHO05D009893 1.4e-09 66.6 86 40.7
DCAR_002716 Daucus carota HOM05D008098 ORTHO05D009893 1.4e-09 66.6 124 35.5
Nn1g02382 Nelumbo nucifera HOM05D008098 ORTHO05D009893 1.9e-09 66.2 134 35.8
Cfa006173 Carpinus fangiana HOM05D008098 ORTHO05D009893 4.1e-09 65.1 89 37.1
CiPaw.07G089300 Carya illinoinensis HOM05D008098 ORTHO05D009893 9.2e-09 63.9 133 34.6
Manes.01G205500 Manihot esculenta HOM05D008098 ORTHO05D009893 9.2e-09 63.9 110 34.5
Potri.002G050100 Populus trichocarpa HOM05D008098 ORTHO05D009893 9.2e-09 63.9 118 33.9
Dinv17090 Davidia involucrata HOM05D008098 ORTHO05D009893 1.2e-08 63.5 78 38.5
Atru.chr5.1485 Acer truncatum HOM05D008098 ORTHO05D009893 2.1e-08 62.8 127 33.9
Aqoxy5G00430 Aquilegia oxysepala HOM05D008098 ORTHO05D009893 2.1e-08 62.8 68 50.0
Hma1.2p1_1572F.1_g291470 Hydrangea macrophylla HOM05D008098 ORTHO05D009893 4.6e-08 61.6 81 42.0
Sc17g0001270 Simmondsia chinensis HOM05D008098 ORTHO05D009893 7.8e-08 60.8 118 36.4
EL10Ac5g10528 Beta vulgaris HOM05D008098 ORTHO05D009893 1.3e-07 60.1 51 51.0
Prupe.8G237300 Prunus persica HOM05D008098 ORTHO05D009893 1.3e-07 60.1 130 31.5
Sabra05G0162400 Salix brachista HOM05D008098 ORTHO05D009893 1.7e-07 59.7 119 32.8
Cpa.g.c43574 Carica papaya HOM05D026518 ORTHO05D028545 2.3e-07 59.3 61 39.3
Cfa011029 Carpinus fangiana HOM05D000562 ORTHO05D000388 2.3e-07 59.3 57 45.6
FAN21G3128 Fragaria x ananassa HOM05D025153 ORTHO05D009893 2.3e-07 59.3 55 45.5
RcHm_v2.0_Chr6g0290431 Rosa chinensis HOM05D008098 ORTHO05D009893 2.3e-07 59.3 91 36.3
CDE02G3756 Ceratophyllum demersum HOM05D000562 ORTHO05D000388 3.0e-07 58.9 76 39.5
Haze_02896 Corylus avellana HOM05D000562 ORTHO05D000388 3.0e-07 58.9 57 45.6
AT3G63230 Arabidopsis thaliana HOM05D013860 ORTHO05D009893 3.9e-07 58.5 75 41.3
Carub.0005s2991 Capsella rubella HOM05D013860 ORTHO05D009893 3.9e-07 58.5 59 45.8
unitig_8.g4699 Utricularia gibba HOM05D033585 ORTHO05D037817 6.6e-07 57.8 85 42.4
CSS0015317 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 8.6e-07 57.4 69 40.6
Duzib138G1817 Durio zibethinus HOM05D008098 ORTHO05D009893 8.6e-07 57.4 117 34.2
FAN27G1076 Fragaria x ananassa HOM05D008098 ORTHO05D009893 8.6e-07 57.4 66 43.9
Glyma.03G105400 Glycine max HOM05D000562 ORTHO05D000388 8.6e-07 57.4 75 37.3
CiPaw.13G022400 Carya illinoinensis HOM05D000562 ORTHO05D000388 1.5e-06 56.6 56 42.9
FAN16G2666 Fragaria x ananassa HOM05D025153 ORTHO05D017966 1.5e-06 56.6 55 43.6
FAN20G2698 Fragaria x ananassa HOM05D008098 ORTHO05D009893 1.5e-06 56.6 66 43.9
FAN24G1322 Fragaria x ananassa HOM05D008098 ORTHO05D009893 1.5e-06 56.6 76 40.8
FAN11G2600 Fragaria x ananassa HOM05D025153 ORTHO05D009893 1.9e-06 56.2 43 53.5
BcaB02g08846 Brassica carinata HOM05D000562 ORTHO05D000388 2.5e-06 55.8 55 47.3
CDE11G0202 Ceratophyllum demersum HOM05D000562 ORTHO05D000388 2.5e-06 55.8 70 38.6
Nitab4.5_0006135g0010 Nicotiana tabacum HOM05D000562 ORTHO05D000388 2.5e-06 55.8 56 42.9
PSO170G2914 Papaver somniferum HOM05D008098 ORTHO05D009893 2.5e-06 55.8 117 31.6
Sp5g00310 Schrenkiella parvula HOM05D013860 ORTHO05D009893 2.5e-06 55.8 51 51.0
Sed0023946 Sechium edule HOM05D000562 ORTHO05D000388 2.5e-06 55.8 55 41.8
SGA_v2.0_scaffold148G36431 Striga asiatica HOM05D030106 ORTHO05D030155 2.5e-06 55.8 49 44.9
Nitab4.5_0001255g0070 Nicotiana tabacum HOM05D000562 ORTHO05D000388 3.3e-06 55.5 56 42.9
Potri.014G052900 Populus trichocarpa HOM05D000562 ORTHO05D000388 3.3e-06 55.5 46 47.8
Thecc.01G274000 Theobroma cacao HOM05D008098 ORTHO05D009893 3.3e-06 55.5 72 33.3
CSS0028803 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 4.3e-06 55.1 99 37.4
CAN.G1445.4 Capsicum annuum HOM05D000562 ORTHO05D000388 4.3e-06 55.1 46 50.0
Glyma.07G117300 Glycine max HOM05D000562 ORTHO05D000388 4.3e-06 55.1 75 36.0
MBI04_g46282_MAGBIO Magnolia biondii HOM05D000562 ORTHO05D000388 4.3e-06 55.1 46 45.7
PSO782G1847 Papaver somniferum HOM05D000562 ORTHO05D000388 4.3e-06 55.1 45 48.9
QL04p026339 Quercus lobata HOM05D000562 ORTHO05D000388 4.3e-06 55.1 55 45.5
ECA236G3924 Erigeron canadensis HOM05D000690 ORTHO05D002679 5.6e-06 54.7 71 39.4
HanXRQChr06g0168301 Helianthus annuus HOM05D000562 ORTHO05D000388 5.6e-06 54.7 46 45.7
Hund17122 Selenicereus undatus HOM05D000562 ORTHO05D000388 5.6e-06 54.7 55 45.5
THA.LOC104810583 Tarenaya hassleriana HOM05D000562 ORTHO05D000388 5.6e-06 54.7 40 50.0
A01p00710 Brassica napus HOM05D000562 ORTHO05D000388 7.3e-06 54.3 48 47.9
A05p04820 Brassica napus HOM05D000562 ORTHO05D000388 7.3e-06 54.3 45 51.1
C04p05650 Brassica napus HOM05D000562 ORTHO05D000388 7.3e-06 54.3 45 51.1
BolC1t00083H Brassica oleracea HOM05D000562 ORTHO05D000388 7.3e-06 54.3 48 47.9
BolC4t22194H Brassica oleracea HOM05D000562 ORTHO05D000388 7.3e-06 54.3 45 51.1
BraA01t00075Z Brassica rapa HOM05D000562 ORTHO05D000388 7.3e-06 54.3 48 47.9
BraA05t19457Z Brassica rapa HOM05D000562 ORTHO05D000388 7.3e-06 54.3 45 51.1
ClCG00G002470 Citrullus lanatus HOM05D000562 ORTHO05D000388 7.3e-06 54.3 45 48.9
ClCG05G002920 Citrullus lanatus HOM05D000562 ORTHO05D000388 7.3e-06 54.3 45 48.9
MELO3C006271.2 Cucumis melo HOM05D000562 ORTHO05D000388 7.3e-06 54.3 45 48.9
CsaV3_3G010480 Cucumis sativus L. HOM05D000562 ORTHO05D000388 7.3e-06 54.3 45 48.9
Peaxi162Scf00084g00028 Petunia axillaris HOM05D000562 ORTHO05D000388 7.3e-06 54.3 46 47.8
BcaB06g29392 Brassica carinata HOM05D000562 ORTHO05D000388 9.5e-06 53.9 46 50.0
CsaV3_2G010910 Cucumis sativus L. HOM05D000562 ORTHO05D000388 9.5e-06 53.9 55 40.0
Duzib235G0305 Durio zibethinus HOM05D000562 ORTHO05D000388 9.5e-06 53.9 48 45.8
PSO063G1774 Papaver somniferum HOM05D000562 ORTHO05D000388 9.5e-06 53.9 45 48.9
Psat4g222200 Pisum sativum HOM05D000562 ORTHO05D000388 9.5e-06 53.9 55 40.0
Prupe.1G018100 Prunus persica HOM05D008098 ORTHO05D009893 9.5e-06 53.9 49 49.0


User provided reference genes

Program Settings