Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 2.1e-247 858.6 442 100.0
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 8.8e-145 517.7 474 62.0
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.6e-123 445.3 450 58.9
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.4e-110 403.3 453 53.4
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.4e-110 403.3 453 53.4
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 6.0e-109 398.7 410 56.3
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 8.6e-108 394.8 466 52.4
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.2e-103 380.2 443 53.0
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 1.4e-102 377.5 477 48.8
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 5.4e-102 375.6 444 52.7
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 5.6e-99 365.5 460 50.2
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 1.2e-98 364.4 434 52.1
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.1e-98 363.6 460 50.0
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.2e-97 359.0 440 49.5
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 2.3e-92 343.6 461 47.1
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.1e-91 341.3 453 47.9
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 4.9e-87 325.9 461 45.6
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 2.4e-86 323.6 467 43.9
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.7e-84 317.4 452 44.9
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 2.3e-84 317.0 444 48.6
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 6.6e-84 315.5 446 46.2
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.5e-83 314.3 443 46.7
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 4.8e-82 309.3 459 45.8
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 5.3e-81 305.8 469 44.8
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.3e-79 301.2 449 43.4
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 1.3e-79 301.2 441 45.1
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 2.9e-79 300.1 458 43.9
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 2.9e-79 300.1 377 49.6
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 4.9e-79 299.3 459 44.7
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 4.9e-79 299.3 465 43.0
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 1.4e-78 297.7 457 43.3
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 2.4e-78 297.0 452 44.5
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 5.4e-78 295.8 357 50.4
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 2.1e-77 293.9 472 43.2
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 2.1e-77 293.9 435 45.7
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 4.6e-77 292.7 453 43.5
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 4.6e-77 292.7 446 43.7
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.3e-76 291.2 457 42.7
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 3.0e-76 290.0 446 42.8
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 7.4e-75 285.4 460 44.6
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.3e-74 284.6 453 42.8
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 1.3e-74 284.6 421 44.4
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 1.3e-74 284.6 481 40.3
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.8e-73 280.8 480 41.2
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 2.4e-73 280.4 449 42.3
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 2.0e-72 277.3 366 49.2
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.0e-72 277.3 458 40.6
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 5.8e-72 275.8 442 40.7
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 2.2e-71 273.9 414 44.9
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 2.2e-71 273.9 470 41.3
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 6.5e-71 272.3 469 39.9
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 8.4e-71 271.9 448 42.0
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 8.4e-71 271.9 446 40.6
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.5e-70 270.4 419 43.2
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 2.7e-69 266.9 459 42.0
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 7.9e-69 265.4 419 43.0
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.8e-68 264.2 449 40.8
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 3.0e-68 263.5 463 41.3
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 3.0e-68 263.5 451 40.6
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.1e-67 261.5 341 47.2
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 1.5e-67 261.2 436 40.8
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 1.4e-65 254.6 477 39.8
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 1.8e-65 254.2 441 40.4
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 3.1e-65 253.4 446 41.5
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 6.9e-65 252.3 478 39.3
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.4e-64 250.0 350 44.9
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.0e-63 248.4 362 43.6
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.7e-63 247.7 362 43.4
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 2.9e-63 246.9 459 38.8
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.8e-63 246.5 321 48.6
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 5.5e-62 242.7 350 45.1
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.7e-61 240.4 407 41.5
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 1.3e-60 238.0 442 39.6
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 1.8e-60 237.7 393 40.7
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 2.3e-60 237.3 466 40.1
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 2.3e-60 237.3 450 38.9
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 3.0e-60 236.9 503 36.2
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.9e-59 234.2 348 41.7
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.8e-57 227.6 418 40.9
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.8e-57 227.6 412 39.1
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 4.1e-57 226.5 463 37.1
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 5.9e-56 222.6 349 41.3
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 7.7e-56 222.2 430 37.4
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.0e-55 221.9 468 37.8
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 2.2e-55 220.7 360 40.3
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 3.8e-55 219.9 349 42.4
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 6.5e-55 219.2 340 40.6
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 7.9e-53 212.2 450 35.3
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.0e-52 211.8 460 37.0
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.9e-52 209.9 370 40.5
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.0e-51 207.6 289 43.9
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 5.7e-51 206.1 367 39.5
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 4.8e-50 203.0 447 37.6
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 4.8e-50 203.0 449 35.4
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 5.9e-48 196.1 401 36.9
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 7.7e-48 195.7 383 38.4
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 7.7e-48 195.7 287 41.8
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.7e-47 194.5 350 41.4
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 2.2e-47 194.1 431 36.4
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 2.9e-47 193.7 447 35.1
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 1.1e-46 191.8 395 36.7
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 4.2e-46 189.9 469 35.0
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 7.4e-43 179.1 401 34.9
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.7e-42 177.9 371 39.1
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.2e-42 177.6 360 37.5
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 6.3e-42 176.0 424 35.1
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 4.1e-41 173.3 341 37.0
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 2.9e-39 167.2 203 47.8
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 3.8e-39 166.8 439 32.3
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 3.8e-39 166.8 439 32.3
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 1.5e-38 164.9 234 42.7
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 7.2e-38 162.5 381 34.1
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 1.6e-37 161.4 326 37.4
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 4.7e-37 159.8 344 34.0
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.7e-34 150.2 294 38.4
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 7.0e-33 146.0 249 40.2
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.6e-32 144.8 190 43.7
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 2.0e-32 144.4 259 39.0
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 8.5e-31 139.0 351 36.2
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 5.5e-30 136.3 179 45.8
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.2e-29 135.2 249 39.4
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.0e-28 132.1 271 36.9
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 2.2e-26 124.4 152 43.4
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 2.0e-24 117.9 159 50.3
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.5e-24 116.7 220 39.5
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-23 115.2 183 39.3
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.5e-22 111.7 230 37.0
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.1e-21 107.8 152 46.7
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 1.4e-17 95.1 473 25.8
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 1.4e-17 95.1 144 42.4
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 5.9e-16 89.7 163 42.3
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.3e-15 88.6 153 43.1
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.9e-14 84.7 81 54.3
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.9e-10 70.9 114 41.2
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 7.0e-09 66.2 167 31.1
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.5e-06 58.5 94 44.7
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.3e-06 57.4 105 39.0
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 3.3e-06 57.4 94 40.4
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 4.3e-06 57.0 91 47.3


User provided reference genes

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