Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12403 Avicennia marina HOM05D004133 ORTHO05D004683 1.3e-73 280.0 190 100.0
MSTRG.17668 Avicennia marina HOM05D004133 ORTHO05D004683 6.9e-54 214.5 184 83.7
SalBow3G0269 Salvia bowleyana HOM05D004133 ORTHO05D004683 3.4e-53 212.2 184 74.5
Migut.N02432 Erythranthe guttata HOM05D004133 ORTHO05D004683 9.9e-53 210.7 184 80.4
Oeu026353.2 Olea europaea HOM05D004133 ORTHO05D004683 1.1e-51 207.2 172 87.2
CSS0028218 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 1.3e-49 200.3 184 77.7
CSS0023526 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 8.7e-49 197.6 184 72.8
Gohir.D08G017300 Gossypium hirsutum HOM05D004133 ORTHO05D004683 1.5e-48 196.8 184 72.3
Gorai.004G011700 Gossypium raimondii HOM05D004133 ORTHO05D004683 5.6e-48 194.9 184 71.7
Duzib170G1022 Durio zibethinus HOM05D004133 ORTHO05D004683 1.6e-47 193.4 184 71.7
Lj2A832T11 Lonicera japonica HOM05D004133 ORTHO05D004683 3.6e-47 192.2 184 69.6
Manes.11G104780 Manihot esculenta HOM05D004133 ORTHO05D004683 6.2e-47 191.4 184 70.7
Prupe.6G148800 Prunus persica HOM05D004133 ORTHO05D004683 6.2e-47 191.4 186 77.4
Gohir.A08G007200 Gossypium hirsutum HOM05D004133 ORTHO05D004683 8.1e-47 191.0 184 70.1
CiPaw.13G126000 Carya illinoinensis HOM05D004133 ORTHO05D004683 3.1e-46 189.1 184 70.1
Potri.009G151700 Populus trichocarpa HOM05D004133 ORTHO05D004683 3.1e-46 189.1 172 80.2
Cfa010217 Carpinus fangiana HOM05D004133 ORTHO05D004683 4.0e-46 188.7 184 69.0
Haze_23604 Corylus avellana HOM05D004133 ORTHO05D004683 4.0e-46 188.7 184 69.6
THA.LOC104810948 Tarenaya hassleriana HOM05D004133 ORTHO05D004683 5.3e-46 188.3 184 69.0
Phvul.011G101100 Phaseolus vulgaris HOM05D004133 ORTHO05D004683 9.0e-46 187.6 184 73.4
Dinv32152 Davidia involucrata HOM05D004133 ORTHO05D004683 1.2e-45 187.2 172 73.8
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.2e-45 187.2 184 69.0
Duzib168G0387 Durio zibethinus HOM05D004133 ORTHO05D004683 2.0e-45 186.4 172 73.8
Nitab4.5_0000875g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.6e-45 186.0 184 75.0
Peaxi162Scf00098g01532 Petunia axillaris HOM05D004133 ORTHO05D004683 2.6e-45 186.0 172 80.2
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 4.5e-45 185.3 184 67.9
TWI31G0797 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 4.5e-45 185.3 184 70.7
Cc01_g07980 Coffea canephora HOM05D004133 ORTHO05D004683 7.6e-45 184.5 172 75.6
Actinidia22457 Actinidia chinensis HOM05D004133 ORTHO05D004683 9.9e-45 184.1 172 72.7
VMungo1127G0510 Vigna mungo HOM05D004133 ORTHO05D004683 9.9e-45 184.1 184 71.2
Sc21g0006690 Simmondsia chinensis HOM05D004133 ORTHO05D004683 1.3e-44 183.7 184 69.0
TWI79G1660 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 1.3e-44 183.7 184 71.7
Glyma.06G308200 Glycine max HOM05D004133 ORTHO05D004683 2.2e-44 183.0 172 77.9
arahy.Tifrunner.gnm1.ann1.79DDAD Arachis hypogaea HOM05D004133 ORTHO05D004683 2.9e-44 182.6 172 71.5
Lalb_Chr01g0005781 Lupinus albus HOM05D004133 ORTHO05D004683 2.9e-44 182.6 172 72.1
COL.COLO4_25370 Corchorus olitorius HOM05D004133 ORTHO05D004683 3.8e-44 182.2 184 69.0
Lalb_Chr19g0136091 Lupinus albus HOM05D004133 ORTHO05D004683 3.8e-44 182.2 172 67.4
Nitab4.5_0002183g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 3.8e-44 182.2 172 79.7
Atru.chr3.3052 Acer truncatum HOM05D004133 ORTHO05D004683 4.9e-44 181.8 184 66.3
Atru.chr3.3061 Acer truncatum HOM05D004133 ORTHO05D004683 4.9e-44 181.8 184 66.3
arahy.Tifrunner.gnm1.ann1.A1UAR7 Arachis hypogaea HOM05D004133 ORTHO05D004683 6.4e-44 181.4 172 70.9
CARHR191540 Cardamine hirsuta HOM05D004133 ORTHO05D004683 6.4e-44 181.4 184 67.9
Glyma.12G096600 Glycine max HOM05D004133 ORTHO05D004683 6.4e-44 181.4 172 77.3
Lj3g0006419 Lotus japonicus HOM05D004133 ORTHO05D004683 6.4e-44 181.4 172 74.4
Sp6g23200 Schrenkiella parvula HOM05D004133 ORTHO05D004683 6.4e-44 181.4 184 67.4
AL6G32950 Arabidopsis lyrata HOM05D004133 ORTHO05D004683 8.4e-44 181.0 184 66.8
Carub.0006s1963 Capsella rubella HOM05D004133 ORTHO05D004683 8.4e-44 181.0 184 67.9
PSO384G2343 Papaver somniferum HOM05D004133 ORTHO05D004683 1.4e-43 180.3 184 71.2
Hma1.2p1_1811F.1_g303595 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 1.9e-43 179.9 172 79.7
BcaB01g04751 Brassica carinata HOM05D004133 ORTHO05D004683 2.4e-43 179.5 184 66.8
Sabra09G0120200 Salix brachista HOM05D004133 ORTHO05D004683 2.4e-43 179.5 172 79.1
SGA_v2.0_scaffold16G07524 Striga asiatica HOM05D004133 ORTHO05D004683 3.2e-43 179.1 229 60.7
Potri.004G190600 Populus trichocarpa HOM05D004133 ORTHO05D004683 4.2e-43 178.7 172 78.5
AT5G21990 Arabidopsis thaliana HOM05D004133 ORTHO05D004683 5.5e-43 178.3 172 70.3
PSO339G3867 Papaver somniferum HOM05D004133 ORTHO05D004683 5.5e-43 178.3 172 75.0
A03p10510 Brassica napus HOM05D004133 ORTHO05D004683 7.1e-43 177.9 184 66.8
BraA03t10363Z Brassica rapa HOM05D004133 ORTHO05D004683 7.1e-43 177.9 184 66.8
DCAR_012257 Daucus carota HOM05D004133 ORTHO05D004683 7.1e-43 177.9 184 73.9
Eucgr.J00595 Eucalyptus grandis HOM05D004133 ORTHO05D004683 7.1e-43 177.9 171 71.3
MD03G1160600 Malus domestica HOM05D004133 ORTHO05D004683 7.1e-43 177.9 174 76.4
Psat7g203680 Pisum sativum HOM05D004133 ORTHO05D004683 9.3e-43 177.6 172 75.0
Aqoxy1G00601 Aquilegia oxysepala HOM05D004133 ORTHO05D004683 1.2e-42 177.2 172 76.2
BolC3t13681H Brassica oleracea HOM05D004133 ORTHO05D004683 1.2e-42 177.2 184 66.3
TPR.G4594 Trifolium pratense HOM05D004133 ORTHO05D004683 1.2e-42 177.2 184 65.8
EL10Ac7g16263 Beta vulgaris HOM05D004133 ORTHO05D004683 1.6e-42 176.8 184 65.2
Thhalv10013111m.g Eutrema salsugineum HOM05D004133 ORTHO05D004683 2.7e-42 176.0 184 66.3
Sabra04G0127700 Salix brachista HOM05D004133 ORTHO05D004683 3.5e-42 175.6 172 70.9
ClCG02G024090 Citrullus lanatus HOM05D004133 ORTHO05D004683 6.0e-42 174.9 168 78.0
FAN11G3250 Fragaria x ananassa HOM05D004133 ORTHO05D004683 6.0e-42 174.9 186 72.0
RcHm_v2.0_Chr1g0344561 Rosa chinensis HOM05D004133 ORTHO05D004683 6.0e-42 174.9 186 71.5
BolC9t58332H Brassica oleracea HOM05D004133 ORTHO05D004683 7.9e-42 174.5 184 66.3
vmacro04056 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 7.9e-42 174.5 187 67.4
C09p54680 Brassica napus HOM05D001689 ORTHO05D004683 1.0e-41 174.1 184 66.3
FAN21G0751 Fragaria x ananassa HOM05D004133 ORTHO05D004683 1.0e-41 174.1 186 72.0
Solyc06g073840.3 Solanum lycopersicum HOM05D004133 ORTHO05D004683 1.0e-41 174.1 172 70.9
ATR0697G090 Amborella trichopoda HOM05D004133 ORTHO05D004683 1.8e-41 173.3 184 60.9
A10p18730 Brassica napus HOM05D004133 ORTHO05D004683 1.8e-41 173.3 184 65.8
C03p12090 Brassica napus HOM05D004133 ORTHO05D004683 1.8e-41 173.3 184 65.2
BraA10t43953Z Brassica rapa HOM05D004133 ORTHO05D004683 1.8e-41 173.3 184 65.8
CANSAT54G1788 Cannabis sativa HOM05D004133 ORTHO05D004683 1.8e-41 173.3 180 68.3
Ca_19492_v3 Cicer arietinum L. HOM05D004133 ORTHO05D004683 2.3e-41 172.9 172 69.8
PGR119G1432 Punica granatum HOM05D004133 ORTHO05D004683 3.0e-41 172.6 184 66.8
TAR633G2810 Trochodendron aralioides HOM05D004133 ORTHO05D004683 3.0e-41 172.6 179 63.7
BcaB08g36460 Brassica carinata HOM05D004133 ORTHO05D004683 3.9e-41 172.2 184 64.7
FAN16G0897 Fragaria x ananassa HOM05D004133 ORTHO05D004683 3.9e-41 172.2 186 71.5
RcHm_v2.0_Chr5g0049211 Rosa chinensis HOM05D004133 ORTHO05D004683 3.9e-41 172.2 186 71.5
FvH4_3g26800 Fragaria vesca HOM05D004133 ORTHO05D004683 5.1e-41 171.8 186 71.5
QL01p018923 Quercus lobata HOM05D004133 ORTHO05D004683 1.1e-40 170.6 184 65.8
AUR62020201 Chenopodium quinoa HOM05D004133 ORTHO05D004683 1.9e-40 169.9 184 64.7
Medtr4g050120 Medicago truncatula HOM05D004133 ORTHO05D004683 1.9e-40 169.9 184 63.6
Hund18814 Selenicereus undatus HOM05D004133 ORTHO05D004683 3.3e-40 169.1 184 65.8
Sopen06g030240 Solanum pennellii HOM05D004133 ORTHO05D004683 3.3e-40 169.1 172 76.2
Cpa.g.sc103.47 Carica papaya HOM05D004133 ORTHO05D004683 4.3e-40 168.7 180 72.8
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 5.6e-40 168.3 168 78.0
GSVIVG01037520001 Vitis vinifera HOM05D004133 ORTHO05D004683 1.6e-39 166.8 179 65.9
ECA238G1841 Erigeron canadensis HOM05D004133 ORTHO05D004683 2.1e-39 166.4 180 67.8
Ciclev10004601m.g Citrus clementina HOM05D004133 ORTHO05D004683 3.7e-39 165.6 184 66.3
AUR62001582 Chenopodium quinoa HOM05D004133 ORTHO05D004683 6.2e-39 164.9 172 67.4
CDE10G0036 Ceratophyllum demersum HOM05D004133 ORTHO05D004683 8.1e-39 164.5 167 68.9
MELO3C014691.2 Cucumis melo HOM05D004133 ORTHO05D004683 8.1e-39 164.5 180 72.2
CAN.G1463.21 Capsicum annuum HOM05D004133 ORTHO05D004683 1.4e-38 163.7 172 73.8
HanXRQChr13g0420391 Helianthus annuus HOM05D004133 ORTHO05D004683 2.4e-38 162.9 184 56.5
PGSC0003DMG400005939 Solanum tuberosum HOM05D004133 ORTHO05D004683 3.1e-38 162.5 167 69.5
unitig_8.g2980 Utricularia gibba HOM05D004133 ORTHO05D004683 1.2e-37 160.6 183 72.7
Sed0020599 Sechium edule HOM05D004133 ORTHO05D004683 2.0e-37 159.8 179 64.8
Ah.15g098820 Amaranthus hybridus HOM05D004133 ORTHO05D004683 4.5e-37 158.7 168 66.1
BcaC03g13851 Brassica carinata HOM05D004133 ORTHO05D004683 2.7e-34 149.4 172 58.7
SEGI_40011 Sequoiadendron giganteum HOM05D004133 ORTHO05D004683 6.7e-33 144.8 184 60.3
HPP92_017668 Vanilla planifolia HOM05D004133 ORTHO05D004683 6.7e-33 144.8 168 65.5
Os07g0161000 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 9.6e-32 141.0 168 45.2
Lsat_1_v5_gn_2_35581 Lactuca sativa HOM05D004133 ORTHO05D004683 2.8e-31 139.4 184 56.0
BcaC01g06615 Brassica carinata HOM05D004133 ORTHO05D004683 4.8e-31 138.7 170 64.1
Mapoly0077s0006 Marchantia polymorpha HOM05D004133 ORTHO05D004683 1.8e-30 136.7 172 62.8
Lsat_1_v5_gn_3_115221 Lactuca sativa HOM05D004133 ORTHO05D004683 4.1e-30 135.6 184 48.4
TAR636G2180 Trochodendron aralioides HOM05D004133 ORTHO05D004683 5.3e-30 135.2 137 59.9
Zm00001eb300510 Zea mays HOM05D004133 ORTHO05D004683 6.9e-30 134.8 167 62.9
BcaB05g22756 Brassica carinata HOM05D004133 ORTHO05D004683 1.5e-29 133.7 180 57.8
Rhsim01G0198600 Rhododendron simsii HOM05D004133 ORTHO05D004683 3.4e-29 132.5 168 53.0
Ah.08g222320 Amaranthus hybridus HOM05D004133 ORTHO05D004683 1.0e-28 131.0 125 75.2
RcHm_v2.0_Chr1g0344781 Rosa chinensis HOM05D004133 ORTHO05D004683 4.2e-27 125.6 97 59.8
MBI05_g40557_MAGBIO Magnolia biondii HOM05D004133 ORTHO05D004683 5.5e-27 125.2 170 64.1
Nitab4.5_0006895g0020 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.2e-26 124.0 79 75.9
Actinidia06347 Actinidia chinensis HOM05D004133 ORTHO05D004683 6.1e-26 121.7 85 68.2
Thecc.09G268600 Theobroma cacao HOM05D004133 ORTHO05D004683 4.3e-24 115.5 127 72.4
Nn2g14411 Nelumbo nucifera HOM05D004133 ORTHO05D004683 7.4e-24 114.8 98 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1320 Anthoceros agrestis HOM05D004133 ORTHO05D004683 1.4e-22 110.5 169 49.7
Rhsim13G0198700 Rhododendron simsii HOM05D004133 ORTHO05D004683 3.1e-22 109.4 75 68.0
Sed0001128 Sechium edule HOM05D004133 ORTHO05D004683 5.3e-22 108.6 71 73.2
Pp3c11_16900 Physcomitrium patens HOM05D004133 ORTHO05D004683 2.2e-20 103.2 168 58.9
SMO141G0183 Selaginella moellendorffii HOM05D004133 ORTHO05D004683 3.2e-19 99.4 168 55.4
Actinidia12904 Actinidia chinensis HOM05D004133 ORTHO05D004683 1.2e-18 97.4 58 79.3
Aa31LG1G13430 Aethionema arabicum HOM05D004133 ORTHO05D004683 3.6e-18 95.9 75 61.3
Peaxi162Scf00259g00213 Petunia axillaris HOM05D004133 ORTHO05D004683 2.3e-17 93.2 94 54.3
Os04g0437500 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 1.5e-16 90.5 173 34.7
Rhsim13G0198800 Rhododendron simsii HOM05D004133 ORTHO05D004683 4.3e-16 89.0 109 71.6
CBR_g30778 Chara braunii HOM05D004133 ORTHO05D004683 1.3e-15 87.4 176 42.0
SHI25280 Sapria himalayana HOM05D004133 ORTHO05D004683 1.2e-13 80.9 65 55.4
BolC2t07129H Brassica oleracea HOM05D004133 ORTHO05D004683 2.6e-13 79.7 119 63.9
MCO02G231 Micromonas commoda HOM05D004133 ORTHO05D004683 2.5e-11 73.2 86 41.9
BcaC04g19526 Brassica carinata HOM05D004133 ORTHO05D004683 5.5e-11 72.0 101 68.3
Cre02.g092550 Chlamydomonas reinhardtii HOM05D004133 ORTHO05D004683 1.8e-09 67.0 75 41.3
Dinv18869 Davidia involucrata HOM05D004133 ORTHO05D004683 6.3e-07 58.5 51 82.4
PRCOL_00003816 Prasinoderma coloniale HOM05D004133 ORTHO05D004683 2.4e-06 56.6 73 39.7


User provided reference genes

Program Settings