Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 1.1e-87 326.6 170 100.0
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 4.2e-63 245.0 170 78.2
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 1.6e-57 226.5 176 71.0
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 2.1e-54 216.1 175 69.1
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 2.8e-54 215.7 175 69.1
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 4.7e-54 214.9 175 69.1
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 4.7e-54 214.9 177 67.2
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 6.1e-54 214.5 178 69.7
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 1.8e-53 213.0 177 70.1
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 1.8e-53 213.0 179 67.6
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 2.3e-53 212.6 178 65.2
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 5.2e-53 211.5 179 68.7
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 2.0e-52 209.5 178 66.3
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 2.6e-52 209.1 175 68.0
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 3.4e-52 208.8 174 67.8
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 4.4e-52 208.4 178 66.9
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 4.4e-52 208.4 178 66.9
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 4.4e-52 208.4 174 67.2
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 4.4e-52 208.4 178 68.0
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 4.4e-52 208.4 178 68.0
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 4.4e-52 208.4 173 68.2
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 5.7e-52 208.0 188 66.5
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 5.7e-52 208.0 173 67.6
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 9.8e-52 207.2 173 67.6
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 1.3e-51 206.8 176 67.0
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 2.2e-51 206.1 182 64.3
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 1.1e-50 203.8 172 65.1
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 1.4e-50 203.4 176 67.6
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 1.4e-50 203.4 174 65.5
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 1.4e-50 203.4 174 69.0
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 1.4e-50 203.4 173 68.8
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 1.8e-50 203.0 179 63.7
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 4.1e-50 201.8 179 65.4
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 5.4e-50 201.4 185 62.2
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 9.2e-50 200.7 177 66.1
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 1.2e-49 200.3 181 65.2
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 1.6e-49 199.9 176 65.9
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 2.7e-49 199.1 179 64.2
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 3.5e-49 198.7 177 66.1
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 3.5e-49 198.7 180 63.9
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 4.6e-49 198.4 177 63.3
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 4.6e-49 198.4 177 63.3
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 4.6e-49 198.4 175 65.1
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 4.6e-49 198.4 183 63.4
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 5.9e-49 198.0 177 65.5
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 5.9e-49 198.0 174 67.2
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 5.9e-49 198.0 178 64.6
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 5.9e-49 198.0 169 67.5
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.0e-48 197.2 178 63.5
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 1.0e-48 197.2 177 62.7
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 1.7e-48 196.4 180 65.0
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 2.3e-48 196.1 176 63.6
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 3.0e-48 195.7 176 65.3
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 3.9e-48 195.3 180 62.8
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 5.0e-48 194.9 180 62.8
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 5.0e-48 194.9 176 64.8
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 6.6e-48 194.5 181 65.2
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 1.1e-47 193.7 174 62.6
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 1.1e-47 193.7 183 61.2
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 1.5e-47 193.4 169 65.7
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.9e-47 193.0 177 62.7
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 2.5e-47 192.6 178 61.8
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 3.3e-47 192.2 181 61.9
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 3.3e-47 192.2 175 63.4
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 4.3e-47 191.8 178 62.9
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 5.6e-47 191.4 178 62.9
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 7.3e-47 191.0 177 62.1
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 9.5e-47 190.7 182 62.6
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 9.5e-47 190.7 183 60.1
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 1.6e-46 189.9 178 61.2
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 2.1e-46 189.5 180 60.6
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 2.1e-46 189.5 178 62.4
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 3.6e-46 188.7 178 64.0
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 6.2e-46 188.0 126 77.8
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 8.0e-46 187.6 175 62.3
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 8.0e-46 187.6 170 63.5
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 1.0e-45 187.2 133 74.4
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 3.1e-45 185.7 181 59.1
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 3.1e-45 185.7 175 62.9
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 4.0e-45 185.3 168 63.1
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 4.0e-45 185.3 175 63.4
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 6.8e-45 184.5 177 61.0
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 6.8e-45 184.5 177 61.6
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 1.5e-44 183.3 176 61.4
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 2.0e-44 183.0 127 77.2
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 2.0e-44 183.0 107 85.0
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 2.0e-44 183.0 133 75.2
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 2.6e-44 182.6 173 61.3
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 2.6e-44 182.6 173 61.3
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 3.4e-44 182.2 168 60.1
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 3.4e-44 182.2 185 58.9
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 3.4e-44 182.2 176 60.8
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 4.4e-44 181.8 179 59.2
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 4.4e-44 181.8 161 61.5
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 4.4e-44 181.8 174 62.6
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 5.8e-44 181.4 181 58.0
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 5.8e-44 181.4 175 61.1
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 5.8e-44 181.4 148 66.9
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 7.5e-44 181.0 179 59.8
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 1.7e-43 179.9 175 59.4
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 2.2e-43 179.5 113 80.5
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 2.9e-43 179.1 160 61.2
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 3.7e-43 178.7 183 59.0
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 3.7e-43 178.7 135 71.1
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 4.9e-43 178.3 174 57.5
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 4.9e-43 178.3 174 57.5
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 4.9e-43 178.3 174 59.2
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 6.4e-43 177.9 173 60.1
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 8.3e-43 177.6 174 59.2
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 1.1e-42 177.2 170 58.2
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 4.1e-42 175.3 173 60.1
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 5.4e-42 174.9 162 59.9
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 1.2e-41 173.7 103 83.5
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 1.7e-40 169.9 165 61.2
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 6.8e-37 157.9 140 60.0
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 3.5e-33 145.6 143 55.2
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 6.6e-32 141.4 138 63.0
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 8.6e-32 141.0 85 80.0
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 2.5e-31 139.4 135 55.6
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 1.2e-30 137.1 171 49.1
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 2.3e-29 132.9 143 53.1
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 8.9e-29 131.0 143 53.1
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 4.4e-28 128.6 105 60.0
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 4.6e-25 118.6 151 43.7
Cre05.g243800 Chlamydomonas reinhardtii HOM05D006115 ORTHO05D007528 3.9e-24 115.5 165 44.2
TAR627G0228 Trochodendron aralioides HOM05D006115 ORTHO05D007528 8.1e-22 107.8 132 54.5
ATR0693G305 Amborella trichopoda HOM05D006115 ORTHO05D007528 1.2e-17 94.0 130 50.8
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 1.5e-15 87.0 173 39.9
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 3.7e-06 55.8 98 27.6


User provided reference genes

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