Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 2.6e-92 342.0 173 100.0
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 1.4e-69 266.5 173 76.3
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 2.4e-66 255.8 164 78.7
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 7.4e-63 244.2 165 73.3
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 7.4e-63 244.2 173 69.4
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 7.4e-63 244.2 162 74.7
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 7.4e-63 244.2 162 74.7
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 1.6e-62 243.0 175 69.1
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 2.1e-62 242.7 156 75.0
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 2.1e-62 242.7 173 66.5
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 3.7e-62 241.9 173 70.5
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 4.8e-62 241.5 173 69.4
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 8.1e-62 240.7 173 70.5
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.1e-61 240.4 173 68.2
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.1e-61 240.4 156 76.3
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 4.0e-61 238.4 173 67.6
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 5.3e-61 238.0 166 68.7
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 5.3e-61 238.0 173 68.2
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 9.0e-61 237.3 169 69.8
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 9.0e-61 237.3 169 69.8
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 3.4e-60 235.3 161 72.7
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 4.5e-60 235.0 155 73.5
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 5.8e-60 234.6 169 69.2
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 7.6e-60 234.2 172 68.6
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 7.6e-60 234.2 173 67.1
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 1.7e-59 233.0 166 69.9
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 2.2e-59 232.6 156 70.5
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 4.9e-59 231.5 172 68.0
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 6.5e-59 231.1 163 68.7
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 8.4e-59 230.7 171 66.1
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.9e-58 229.6 158 71.5
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 4.2e-58 228.4 171 68.4
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 9.3e-58 227.3 166 66.9
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 1.6e-57 226.5 158 70.3
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 6.0e-57 224.6 156 69.9
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 1.0e-56 223.8 163 66.9
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 1.3e-56 223.4 156 69.9
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 1.8e-56 223.0 161 67.1
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 1.8e-56 223.0 176 65.9
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 2.3e-56 222.6 166 65.1
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 3.0e-56 222.2 161 68.3
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 3.0e-56 222.2 156 67.9
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 5.1e-56 221.5 163 66.3
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 1.5e-55 219.9 173 64.7
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 2.5e-55 219.2 170 65.9
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 3.3e-55 218.8 173 63.6
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 3.3e-55 218.8 162 69.1
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 4.3e-55 218.4 175 63.4
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 5.7e-55 218.0 168 66.7
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 1.3e-54 216.9 163 65.0
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 2.1e-54 216.1 166 63.9
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 2.1e-54 216.1 173 64.2
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 2.8e-54 215.7 170 62.9
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 3.7e-54 215.3 160 66.2
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 3.7e-54 215.3 160 66.2
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 8.2e-54 214.2 164 65.2
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 8.2e-54 214.2 163 64.4
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.4e-53 213.4 172 62.8
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.4e-53 213.4 157 68.2
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 1.8e-53 213.0 171 63.7
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 2.4e-53 212.6 163 66.9
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 5.3e-53 211.5 156 68.6
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 5.3e-53 211.5 163 63.8
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 6.9e-53 211.1 163 63.8
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 6.9e-53 211.1 163 63.8
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 1.5e-52 209.9 174 63.8
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 1.5e-52 209.9 163 65.6
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 3.4e-52 208.8 142 69.7
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 3.4e-52 208.8 145 71.0
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 4.5e-52 208.4 163 65.0
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 7.6e-52 207.6 139 74.8
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 1.0e-51 207.2 170 62.4
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 2.2e-51 206.1 162 66.0
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 8.4e-51 204.1 213 53.5
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 8.4e-51 204.1 176 59.7
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 1.1e-50 203.8 158 65.8
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 2.5e-50 202.6 175 62.3
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 2.5e-50 202.6 158 65.2
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 4.2e-50 201.8 165 63.6
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 4.2e-50 201.8 174 58.6
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 4.2e-50 201.8 173 63.6
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 5.5e-50 201.4 163 63.8
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 5.5e-50 201.4 169 62.1
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 9.3e-50 200.7 145 69.7
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 9.3e-50 200.7 163 64.4
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 9.3e-50 200.7 169 62.7
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.6e-49 199.9 165 63.0
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 3.5e-49 198.7 163 62.6
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 4.6e-49 198.4 176 57.4
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 4.6e-49 198.4 174 58.6
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 6.1e-49 198.0 156 64.7
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 6.1e-49 198.0 149 65.1
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 7.9e-49 197.6 165 62.4
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.0e-48 195.7 165 62.4
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 3.9e-48 195.3 151 65.6
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 8.7e-48 194.1 146 67.8
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 1.9e-47 193.0 158 64.6
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 2.5e-47 192.6 237 47.7
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 7.4e-47 191.0 142 69.7
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 7.4e-47 191.0 163 60.7
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 9.7e-47 190.7 143 69.2
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 1.3e-46 190.3 139 69.1
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 6.3e-46 188.0 144 64.6
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 6.5e-43 177.9 147 60.5
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 1.1e-42 177.2 147 58.5
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 1.6e-41 173.3 153 59.5
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 1.1e-39 167.2 132 62.9
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 3.3e-39 165.6 140 61.4
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 2.2e-38 162.9 108 70.4
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 9.1e-37 157.5 128 63.3
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 2.6e-36 156.0 110 71.8
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 1.9e-34 149.8 104 70.2
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 7.9e-33 144.4 126 63.5
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 8.8e-32 141.0 115 64.3
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.1e-31 140.6 84 77.4
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 6.3e-30 134.8 77 79.2
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.1e-29 134.0 89 70.8
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 1.4e-24 117.1 132 45.5
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.3e-24 116.3 82 69.5
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 5.7e-23 111.7 119 45.4
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 5.9e-20 101.7 54 85.2
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 5.9e-20 101.7 62 72.6
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 1.1e-18 97.4 112 50.9
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 1.5e-18 97.1 59 78.0
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.9e-18 96.7 70 71.4
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.9e-18 96.7 70 71.4
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 5.5e-18 95.1 83 62.7
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 6.8e-16 88.2 87 56.3
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 9.8e-15 84.3 51 72.5
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 1.7e-11 73.6 85 38.8
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.5e-10 70.5 53 58.5


User provided reference genes

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