Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 3.2e-57 224.9 118 100.0
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 6.2e-53 210.7 118 91.5
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 8.0e-53 210.3 118 94.1
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 8.0e-53 210.3 120 91.7
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 3.1e-52 208.4 120 90.8
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 6.8e-52 207.2 118 91.5
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 8.9e-52 206.8 118 93.2
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 8.9e-52 206.8 114 93.9
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 1.5e-51 206.1 118 90.7
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 2.6e-51 205.3 118 91.5
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 2.6e-51 205.3 118 91.5
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 3.4e-51 204.9 113 92.0
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.4e-51 204.5 118 90.7
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.4e-51 204.5 118 90.7
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 5.8e-51 204.1 118 91.5
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 5.8e-51 204.1 118 90.7
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 5.8e-51 204.1 118 90.7
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 5.8e-51 204.1 118 90.7
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 7.5e-51 203.8 118 89.8
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 7.5e-51 203.8 113 91.2
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 9.8e-51 203.4 118 89.8
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 1.3e-50 203.0 118 88.1
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.7e-50 202.6 118 87.3
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 1.7e-50 202.6 119 89.9
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 1.7e-50 202.6 118 89.0
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 1.7e-50 202.6 118 89.8
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.7e-50 202.6 118 89.8
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.2e-50 202.2 113 92.0
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 2.2e-50 202.2 118 87.3
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.2e-50 202.2 118 89.0
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 3.7e-50 201.4 119 90.8
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 4.9e-50 201.1 118 89.8
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 4.9e-50 201.1 118 89.0
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 4.9e-50 201.1 113 90.3
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 6.4e-50 200.7 113 91.2
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 6.4e-50 200.7 112 89.3
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 8.3e-50 200.3 115 88.7
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 8.3e-50 200.3 118 90.7
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 8.3e-50 200.3 113 91.2
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 8.3e-50 200.3 120 89.2
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 1.1e-49 199.9 119 89.1
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 89.4
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 1.1e-49 199.9 118 89.0
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 88.5
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 91.2
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 89.4
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.9e-49 199.1 118 87.3
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.9e-49 199.1 113 90.3
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 1.9e-49 199.1 120 87.5
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 2.4e-49 198.7 114 91.2
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 2.4e-49 198.7 109 92.7
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.4e-49 198.7 118 86.4
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.4e-49 198.7 118 86.4
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.4e-49 198.7 118 86.4
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 90.3
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.4e-49 198.7 118 90.7
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.2e-49 198.4 113 87.6
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 3.2e-49 198.4 118 88.1
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 3.2e-49 198.4 122 85.2
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 3.2e-49 198.4 113 89.4
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 4.1e-49 198.0 115 87.0
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 4.1e-49 198.0 115 87.8
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 5.4e-49 197.6 113 88.5
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 5.4e-49 197.6 113 91.2
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 7.0e-49 197.2 115 88.7
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 7.0e-49 197.2 114 87.7
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 7.0e-49 197.2 113 91.2
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 9.2e-49 196.8 113 87.6
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 9.2e-49 196.8 118 88.1
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 1.2e-48 196.4 115 87.0
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 1.2e-48 196.4 115 87.0
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 88.5
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 87.6
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 88.5
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 87.6
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 87.6
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 2.0e-48 195.7 115 87.0
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.0e-48 195.7 115 87.0
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.0e-48 195.7 115 87.0
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.0e-48 195.7 118 86.4
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.0e-48 195.7 118 86.4
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 2.0e-48 195.7 115 87.8
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 87.6
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 87.6
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.5e-48 194.9 119 84.9
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 4.6e-48 194.5 113 87.6
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 4.6e-48 194.5 113 87.6
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 4.6e-48 194.5 113 85.0
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 4.6e-48 194.5 113 88.5
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 6.0e-48 194.1 113 86.7
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 6.0e-48 194.1 113 86.7
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.0e-48 194.1 115 86.1
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 7.8e-48 193.7 113 87.6
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 7.8e-48 193.7 113 86.7
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 7.8e-48 193.7 113 86.7
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 7.8e-48 193.7 120 85.8
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 87.6
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 1.0e-47 193.4 115 86.1
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 85.8
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 85.8
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.7e-47 192.6 113 85.8
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 1.7e-47 192.6 115 87.8
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.7e-47 192.6 111 89.2
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 2.3e-47 192.2 110 89.1
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 3.0e-47 191.8 118 84.7
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 3.9e-47 191.4 111 87.4
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 3.9e-47 191.4 115 85.2
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 6.6e-47 190.7 110 88.2
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 8.6e-47 190.3 113 86.7
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 8.6e-47 190.3 115 84.3
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.5e-46 188.7 115 84.3
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 5.6e-46 187.6 114 83.3
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 5.6e-46 187.6 111 86.5
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 9.5e-46 186.8 113 84.1
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 9.5e-46 186.8 115 83.5
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.2e-45 186.4 113 81.4
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 1.2e-45 186.4 110 85.5
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 2.8e-45 185.3 111 84.7
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 3.6e-45 184.9 105 89.5
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 6.2e-45 184.1 128 78.9
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 8.1e-45 183.7 113 83.2
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 1.4e-44 183.0 115 77.4
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 1.8e-44 182.6 113 82.3
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 4.0e-44 181.4 109 81.7
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 8.9e-44 180.3 113 77.9
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 2.0e-43 179.1 109 83.5
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 5.8e-43 177.6 151 66.9
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 7.5e-43 177.2 112 77.7
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 7.5e-43 177.2 114 73.7
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 4.1e-41 171.4 178 57.3
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.6e-39 163.7 122 74.6
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 4.3e-38 161.4 108 73.1
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.6e-37 159.5 88 92.0
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 1.6e-37 159.5 89 88.8
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 8.1e-37 157.1 197 49.7
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 3.2e-33 145.2 85 87.1
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 7.1e-33 144.1 99 78.8
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 9.2e-33 143.7 81 88.9
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.6e-32 142.9 85 85.9
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 3.5e-32 141.7 86 84.9
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 4.6e-32 141.4 72 93.1
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 7.8e-32 140.6 86 81.4
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 2.3e-31 139.0 73 93.2
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 8.6e-31 137.1 85 82.4
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 2.1e-29 132.5 105 69.5
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 2.1e-29 132.5 105 69.5
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 2.8e-29 132.1 82 82.9
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 6.2e-29 131.0 67 94.0
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 3.8e-26 121.7 76 76.3
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.4e-25 119.8 80 78.8
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 7.1e-25 117.5 106 50.9
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 2.7e-24 115.5 75 86.7
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 3.5e-24 115.2 70 87.1
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 3.0e-23 112.1 83 72.3
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.0e-23 112.1 72 80.6
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 8.1e-21 104.0 75 68.0
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 7.6e-19 97.4 107 58.9
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.0e-15 87.0 47 91.5
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.1e-09 67.0 48 72.9
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 2.1e-08 62.8 43 74.4
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 2.7e-08 62.4 41 78.0
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 2.7e-08 62.4 41 78.0
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 2.7e-08 62.4 60 61.7
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 3.0e-07 58.9 43 72.1
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 3.9e-07 58.5 43 72.1


User provided reference genes

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