Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 1.2e-107 393.3 210 100.0
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 9.3e-60 234.2 216 63.4
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.6e-56 223.4 210 59.5
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 2.0e-46 189.9 228 50.4
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 2.4e-44 183.0 203 54.2
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 2.3e-42 176.4 201 50.2
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.5e-38 163.7 246 43.9
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 2.0e-38 163.3 249 42.6
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 2.6e-38 162.9 249 43.0
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 8.4e-37 157.9 231 43.3
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.2e-36 156.0 230 46.5
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 7.1e-36 154.8 244 45.1
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 7.1e-36 154.8 230 43.5
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 9.3e-36 154.5 250 39.2
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.8e-34 150.2 244 40.2
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 5.1e-34 148.7 229 40.6
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 5.1e-34 148.7 239 43.1
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.7e-34 148.3 252 38.5
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 8.7e-34 147.9 229 40.6
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-33 147.5 230 41.7
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.1e-33 147.5 234 41.9
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.5e-33 147.1 228 41.2
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 3.3e-33 146.0 228 41.7
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.3e-33 145.6 230 44.8
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 9.6e-33 144.4 232 43.1
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.3e-32 144.1 227 43.6
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.3e-32 144.1 232 45.7
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.6e-32 143.7 235 40.4
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.1e-32 143.3 232 43.1
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.1e-32 143.3 232 43.1
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 2.1e-32 143.3 229 40.6
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 2.8e-32 142.9 233 42.9
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.8e-32 142.9 229 40.6
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.8e-32 142.9 229 40.6
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.7e-32 142.5 251 41.8
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 3.7e-32 142.5 251 40.2
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 4.8e-32 142.1 237 40.9
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 4.8e-32 142.1 237 40.9
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 2.4e-31 139.8 238 40.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 5.3e-31 138.7 237 41.8
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 6.9e-31 138.3 235 39.6
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.9e-31 138.3 230 40.9
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.0e-31 137.9 228 39.0
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 9.0e-31 137.9 232 39.7
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.5e-30 137.1 238 42.0
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 4.5e-30 135.6 229 40.6
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.8e-30 135.2 233 41.2
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.8e-30 135.2 233 41.2
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 5.8e-30 135.2 235 40.0
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.8e-30 135.2 226 42.0
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.0e-29 134.4 251 36.3
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.3e-29 134.0 237 39.7
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.2e-29 133.3 228 38.6
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.2e-29 133.3 236 38.6
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.2e-29 133.3 229 40.6
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 5.0e-29 132.1 237 39.7
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 5.0e-29 132.1 240 39.2
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.5e-29 131.7 226 36.7
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 8.4e-29 131.3 238 39.5
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.9e-28 130.2 227 40.5
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 2.5e-28 129.8 232 40.9
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 2.5e-28 129.8 225 39.1
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.2e-28 129.0 227 41.0
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 5.5e-28 128.6 226 39.4
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 9.3e-28 127.9 254 41.3
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 9.3e-28 127.9 236 36.9
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.2e-27 127.5 216 38.0
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.2e-27 127.5 249 37.3
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.6e-27 127.1 199 42.2
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.6e-27 125.6 224 38.8
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 4.6e-27 125.6 237 40.1
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 7.9e-27 124.8 234 36.8
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 7.9e-27 124.8 223 35.9
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 1.0e-26 124.4 234 38.9
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 3.0e-26 122.9 224 38.4
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 3.9e-26 122.5 234 37.6
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.9e-26 122.5 221 42.1
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 6.7e-26 121.7 225 35.6
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.1e-25 120.9 221 39.4
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.5e-25 119.8 215 36.3
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 2.5e-25 119.8 252 40.5
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 3.3e-25 119.4 221 38.9
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 9.7e-25 117.9 224 36.6
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 9.7e-25 117.9 210 39.0
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 1.6e-24 117.1 243 36.2
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 8.2e-24 114.8 239 34.7
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 1.8e-23 113.6 211 37.0
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 3.1e-23 112.8 195 42.6
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 5.3e-23 112.1 220 37.7
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 6.9e-23 111.7 230 32.2
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 2.0e-22 110.2 234 35.5
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 2.0e-22 110.2 252 33.7
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 3.4e-22 109.4 221 35.3
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 5.9e-22 108.6 217 36.4
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.3e-21 107.5 228 39.0
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.7e-21 107.1 233 32.6
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 2.9e-21 106.3 210 41.9
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 6.5e-21 105.1 150 41.3
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.1e-19 100.1 197 39.6
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 2.1e-19 100.1 235 30.2
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.6e-19 99.4 228 31.6
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 2.0e-17 93.6 214 32.7
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.0e-17 93.6 234 38.5
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 7.4e-17 91.7 231 30.7
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 3.7e-16 89.4 215 34.0
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 6.3e-16 88.6 230 31.7
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 1.1e-15 87.8 171 38.0
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 3.1e-15 86.3 278 29.5
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.6e-14 83.2 232 31.0
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 3.4e-14 82.8 208 33.2
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.0e-13 81.3 233 31.3
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.0e-13 81.3 217 31.8
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 2.2e-13 80.1 252 35.7
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 2.2e-13 80.1 207 32.4
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 2.2e-13 80.1 229 33.2
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 2.2e-13 80.1 207 32.4
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 2.2e-13 80.1 229 33.2
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 2.9e-13 79.7 207 32.9
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.9e-13 79.7 222 32.0
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.8e-13 79.3 239 29.3
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 6.5e-13 78.6 89 48.3
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.9e-12 77.0 203 32.5
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 4.2e-12 75.9 280 27.1
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 5.5e-12 75.5 202 32.2
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 9.4e-12 74.7 232 31.5
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.2e-11 74.3 118 46.6
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 2.7e-11 73.2 228 30.7
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 2.7e-11 73.2 228 30.7
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 2.7e-11 73.2 228 30.7
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 4.7e-11 72.4 233 30.9
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 4.7e-11 72.4 233 30.9
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.3e-10 70.1 226 28.3
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 3.0e-10 69.7 210 31.9
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 5.1e-10 68.9 215 31.2
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 8.8e-10 68.2 212 29.7
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 8.8e-10 68.2 226 30.1
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 1.1e-09 67.8 206 34.0
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 4.4e-09 65.9 237 27.0
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 9.7e-09 64.7 140 40.7
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 9.7e-09 64.7 149 35.6
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.8e-08 63.2 210 27.6
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 2.8e-08 63.2 77 45.5
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 6.3e-08 62.0 205 29.3
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.1e-07 61.2 205 28.3
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 3.1e-07 59.7 215 28.8
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 7.0e-07 58.5 45 60.0
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 9.1e-07 58.2 39 64.1
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.5e-06 57.4 37 62.2


User provided reference genes

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