Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 2.1e-230 802.0 397 100.0
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 8.2e-142 507.7 364 70.3
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 1.6e-124 450.3 369 63.4
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 3.5e-116 422.5 382 56.8
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 7.7e-116 421.4 472 51.5
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 1.9e-114 416.8 345 60.6
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 2.7e-113 412.9 374 58.8
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 2.6e-111 406.4 373 57.4
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 3.4e-111 406.0 364 57.1
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 1.3e-110 404.1 373 57.1
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 2.0e-108 396.7 343 57.1
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 2.0e-108 396.7 340 56.8
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 3.5e-108 396.0 340 56.8
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 4.5e-108 395.6 336 56.8
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.3e-107 394.0 343 56.6
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 1.1e-106 391.0 372 55.6
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 1.1e-106 391.0 354 55.6
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 1.8e-104 383.6 332 55.4
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 3.0e-104 382.9 352 56.8
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 4.0e-104 382.5 379 51.5
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 4.0e-104 382.5 380 53.7
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 8.9e-104 381.3 346 55.5
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 2.6e-103 379.8 361 53.7
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 9.8e-103 377.9 363 53.4
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 1.3e-102 377.5 373 50.7
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 1.7e-102 377.1 352 55.1
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.8e-102 376.3 378 53.2
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 1.1e-101 374.4 361 53.2
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 1.1e-101 374.4 442 49.1
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 1.6e-100 370.5 349 53.3
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 2.9e-99 366.3 353 52.1
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 1.1e-98 364.4 361 52.9
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 7.3e-98 361.7 346 52.9
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 7.3e-98 361.7 390 49.2
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 1.6e-97 360.5 365 52.1
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 4.7e-97 359.0 329 55.6
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 6.1e-97 358.6 380 49.2
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 1.0e-96 357.8 339 52.8
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 1.5e-95 354.0 368 51.1
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 5.8e-95 352.1 339 52.8
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 9.8e-95 351.3 353 51.8
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 3.7e-94 349.4 367 49.9
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 6.4e-94 348.6 354 53.7
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 1.9e-93 347.1 347 52.7
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 4.1e-93 345.9 353 52.1
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 1.6e-92 344.0 342 51.8
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 3.5e-92 342.8 369 49.3
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 4.6e-92 342.4 372 49.7
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 1.0e-91 341.3 332 51.8
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 1.0e-91 341.3 372 49.2
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 1.3e-91 340.9 338 52.4
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.7e-91 340.5 383 48.3
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 2.3e-91 340.1 335 52.2
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 5.0e-91 339.0 285 57.2
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 1.1e-90 337.8 374 47.1
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 1.5e-90 337.4 365 50.7
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 3.3e-90 336.3 350 48.9
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 4.3e-90 335.9 364 51.1
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 9.5e-90 334.7 369 49.6
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 1.2e-89 334.3 349 49.0
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 1.6e-89 334.0 373 48.3
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 2.1e-89 333.6 358 47.5
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 4.7e-89 332.4 358 49.7
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 4.7e-89 332.4 364 48.4
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 4.7e-89 332.4 361 51.5
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 1.8e-88 330.5 338 48.8
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 5.2e-88 328.9 382 45.8
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 1.5e-87 327.4 344 51.5
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 3.4e-87 326.2 389 45.0
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.7e-86 323.9 344 49.1
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 3.7e-86 322.8 372 47.3
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 2.4e-85 320.1 364 48.4
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 9.2e-85 318.2 373 47.2
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 1.2e-84 317.8 375 47.2
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 2.1e-84 317.0 369 47.2
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 2.3e-83 313.5 375 46.7
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.1e-82 311.2 356 47.2
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 1.9e-82 310.5 370 46.8
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 4.3e-82 309.3 379 44.6
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 1.2e-81 307.8 376 45.5
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 6.2e-81 305.4 373 45.3
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 5.8e-79 298.9 353 46.7
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 6.4e-78 295.4 337 46.6
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 1.6e-76 290.8 324 46.9
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 8.1e-73 278.5 331 44.1
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 8.1e-73 278.5 401 43.4
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 1.3e-70 271.2 275 51.6
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 1.9e-66 257.3 245 52.2
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 1.3e-65 254.6 334 41.6
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 4.0e-64 249.6 303 44.6
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 2.0e-63 247.3 394 38.8
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 1.4e-61 241.1 261 46.4
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 2.4e-61 240.4 205 57.6
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.4e-56 224.6 297 43.4
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 1.4e-53 214.5 317 39.4
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 3.0e-51 206.8 370 35.9
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 3.0e-51 206.8 287 40.1
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 8.1e-49 198.7 171 57.3
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 4.5e-47 193.0 259 42.5
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.7e-46 191.0 189 52.4
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 6.7e-43 179.1 227 43.6
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.4e-40 171.4 231 42.9
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.9e-38 163.7 112 70.5
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 9.3e-37 158.7 156 53.8
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 1.3e-35 154.8 225 40.0
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 9.4e-29 132.1 324 32.7
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 1.6e-28 131.3 271 28.8
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 1.1e-26 125.2 121 53.7
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 3.1e-24 117.1 223 31.8
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 4.1e-24 116.7 186 38.2
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 1.5e-23 114.8 124 45.2
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 7.2e-13 79.3 231 29.9
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 2.3e-11 74.3 117 40.2
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 2.0e-10 71.2 92 39.1
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.0e-10 71.2 83 41.0
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 1.7e-09 68.2 270 24.4
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.1e-08 65.5 68 45.6
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.1e-08 65.5 68 45.6
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 3.5e-07 60.5 119 34.5
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 4.5e-07 60.1 56 50.0


User provided reference genes

Program Settings