Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12123 Avicennia marina HOM05D006677 ORTHO05D008348 0.0e+00 1578.5 784 100.0
Migut.A01134 Erythranthe guttata HOM05D006677 ORTHO05D008348 0.0e+00 1208.4 793 77.3
SGA_v2.0_scaffold104G30177 Striga asiatica HOM05D006677 ORTHO05D008348 0.0e+00 1178.3 804 74.3
SalBow6G5281 Salvia bowleyana HOM05D006677 ORTHO05D008348 0.0e+00 1160.6 840 70.8
Nitab4.5_0001381g0100 Nicotiana tabacum HOM05D006677 ORTHO05D008348 1.7e-308 1062.4 783 65.8
CAN.G1178.20 Capsicum annuum HOM05D006677 ORTHO05D008348 2.2e-300 1035.4 782 64.3
Sopen08g026930 Solanum pennellii HOM05D006677 ORTHO05D008348 6.5e-300 1033.9 781 64.9
Solyc08g078440.3 Solanum lycopersicum HOM05D006677 ORTHO05D008348 2.5e-299 1031.9 781 64.9
Hma1.2p1_0316F.1_g122840 Hydrangea macrophylla HOM05D006677 ORTHO05D008348 9.4e-299 1030.0 791 65.1
Peaxi162Scf00209g00130 Petunia axillaris HOM05D006677 ORTHO05D008348 2.6e-296 1021.9 783 63.6
Lj2C223G6 Lonicera japonica HOM05D006677 ORTHO05D008348 2.9e-292 1008.4 790 63.7
Nitab4.5_0002289g0120 Nicotiana tabacum HOM05D006677 ORTHO05D008348 4.2e-291 1004.6 782 63.4
Cc08_g12180 Coffea canephora HOM05D006677 ORTHO05D008348 2.0e-288 995.7 781 62.1
COL.COLO4_37128 Corchorus olitorius HOM05D006677 ORTHO05D008348 7.0e-278 960.7 792 59.1
CSS0025591 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 1.6e-277 959.5 784 62.0
Thecc.03G248200 Theobroma cacao HOM05D006677 ORTHO05D008348 4.5e-277 958.0 788 59.4
CANSAT21G0792 Cannabis sativa HOM05D006677 ORTHO05D008348 6.5e-276 954.1 796 59.2
Oeu017057.2 Olea europaea HOM05D006677 ORTHO05D008348 1.5e-275 953.0 820 62.1
Cfa012688 Carpinus fangiana HOM05D006677 ORTHO05D008348 1.7e-271 939.5 787 60.2
Gorai.008G233700 Gossypium raimondii HOM05D006677 ORTHO05D008348 1.1e-270 936.8 791 58.0
Rhsim07G0111300 Rhododendron simsii HOM05D006677 ORTHO05D008348 1.4e-270 936.4 786 60.6
Gohir.D12G218100 Gossypium hirsutum HOM05D006677 ORTHO05D008348 7.0e-270 934.1 791 57.8
TAR374G0600 Trochodendron aralioides HOM05D006677 ORTHO05D008348 3.5e-269 931.8 798 59.5
vmacro14066 Vaccinium macrocarpon HOM05D006677 ORTHO05D008348 4.5e-269 931.4 786 60.3
Duzib068G0477 Durio zibethinus HOM05D006677 ORTHO05D008348 2.9e-268 928.7 792 57.8
CSS0006614 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 8.6e-268 927.2 784 60.3
Rhsim07G0110800 Rhododendron simsii HOM05D006677 ORTHO05D008348 3.3e-267 925.2 807 59.0
Gohir.A12G215500 Gossypium hirsutum HOM05D006677 ORTHO05D008348 7.2e-267 924.1 788 57.6
Prupe.5G065400 Prunus persica HOM05D006677 ORTHO05D008348 2.8e-266 922.2 793 58.3
Haze_07944 Corylus avellana HOM05D006677 ORTHO05D008348 6.1e-266 921.0 847 56.2
MD06G1053300 Malus domestica HOM05D006677 ORTHO05D008348 3.0e-265 918.7 798 58.1
Manes.02G041400 Manihot esculenta HOM05D006677 ORTHO05D008348 2.4e-262 909.1 789 57.2
DCAR_004989 Daucus carota HOM05D006677 ORTHO05D008348 4.1e-262 908.3 785 58.3
MD04G1060300 Malus domestica HOM05D006677 ORTHO05D008348 3.8e-260 901.7 802 57.2
Sc22g0000980 Simmondsia chinensis HOM05D006677 ORTHO05D008348 3.8e-260 901.7 787 57.7
CiPaw.12G050300 Carya illinoinensis HOM05D006677 ORTHO05D008348 3.3e-259 898.7 790 58.6
RcHm_v2.0_Chr7g0203921 Rosa chinensis HOM05D006677 ORTHO05D008348 5.6e-259 897.9 782 58.1
QL12p011426 Quercus lobata HOM05D006677 ORTHO05D008348 4.7e-258 894.8 845 54.6
PGR031G0681 Punica granatum HOM05D006677 ORTHO05D008348 2.3e-257 892.5 790 57.0
TWI60G0317 Tripterygium wilfordii HOM05D006677 ORTHO05D008348 2.3e-257 892.5 785 56.6
Ciclev10018892m.g Citrus clementina HOM05D006677 ORTHO05D008348 1.7e-255 886.3 802 57.5
FAN13G0013 Fragaria x ananassa HOM05D006677 ORTHO05D008348 6.4e-255 884.4 786 57.5
FAN04G1892 Fragaria x ananassa HOM05D006677 ORTHO05D008348 2.4e-254 882.5 789 57.3
FvH4_5g19410 Fragaria vesca HOM05D006677 ORTHO05D008348 9.2e-254 880.6 789 57.0
Dinv21656 Davidia involucrata HOM05D006677 ORTHO05D008348 4.6e-253 878.2 627 68.1
Nn6g33880 Nelumbo nucifera HOM05D006677 ORTHO05D008348 2.3e-252 875.9 800 56.2
Duzib205G2017 Durio zibethinus HOM05D006677 ORTHO05D008348 3.0e-252 875.5 792 55.8
FAN18G1193 Fragaria x ananassa HOM05D006677 ORTHO05D008348 8.6e-252 874.0 789 56.7
Potri.001G155800 Populus trichocarpa HOM05D006677 ORTHO05D008348 1.1e-251 873.6 791 56.0
FAN08G3018 Fragaria x ananassa HOM05D006677 ORTHO05D008348 1.5e-251 873.2 789 57.0
Hund14577 Selenicereus undatus HOM05D006677 ORTHO05D008348 4.3e-251 871.7 785 56.3
AUR62007111 Chenopodium quinoa HOM05D006677 ORTHO05D008348 9.5e-251 870.5 787 56.7
AUR62019973 Chenopodium quinoa HOM05D006677 ORTHO05D008348 1.2e-250 870.2 787 56.5
HanXRQChr16g0501081 Helianthus annuus HOM05D006677 ORTHO05D008348 1.6e-250 869.8 787 56.5
Atru.chr9.1276 Acer truncatum HOM05D006677 ORTHO05D008348 1.2e-248 863.6 793 56.4
Lsat_1_v5_gn_6_18041 Lactuca sativa HOM05D006677 ORTHO05D008348 9.8e-248 860.5 791 56.3
arahy.Tifrunner.gnm1.ann1.IBE8NF Arachis hypogaea HOM05D006677 ORTHO05D008348 1.1e-246 857.1 802 54.4
arahy.Tifrunner.gnm1.ann1.WU4RWF Arachis hypogaea HOM05D006677 ORTHO05D008348 7.0e-246 854.4 802 54.2
Ah.12g054330 Amaranthus hybridus HOM05D006677 ORTHO05D008348 2.3e-244 849.4 786 55.1
THA.LOC104806670 Tarenaya hassleriana HOM05D006677 ORTHO05D008348 1.1e-243 847.0 787 54.3
EL10Ac5g12357 Beta vulgaris HOM05D006677 ORTHO05D008348 3.6e-242 842.0 790 54.2
Lalb_Chr05g0221161 Lupinus albus HOM05D006677 ORTHO05D008348 3.6e-242 842.0 789 54.9
Aqoxy7G00821 Aquilegia oxysepala HOM05D006677 ORTHO05D008348 6.8e-241 837.8 798 53.9
AL8G10640 Arabidopsis lyrata HOM05D006677 ORTHO05D008348 2.1e-237 826.2 790 52.5
CARHR173970 Cardamine hirsuta HOM05D006677 ORTHO05D008348 1.0e-236 823.9 790 51.6
HanXRQChr08g0227751 Helianthus annuus HOM05D006677 ORTHO05D008348 6.6e-236 821.2 790 54.2
Manes.01G083200 Manihot esculenta HOM05D006677 ORTHO05D008348 6.6e-236 821.2 790 52.8
Carub.0008s0038 Capsella rubella HOM05D006677 ORTHO05D008348 1.9e-235 819.7 790 51.9
Thhalv10000783m.g Eutrema salsugineum HOM05D006677 ORTHO05D008348 3.6e-234 815.5 788 51.6
Actinidia26803 Actinidia chinensis HOM05D006677 ORTHO05D008348 1.5e-232 810.1 631 63.1
Lj4g0000262 Lotus japonicus HOM05D006677 ORTHO05D008348 2.0e-232 809.7 786 53.6
Ca_21980_v3 Cicer arietinum L. HOM05D006677 ORTHO05D008348 2.6e-232 809.3 795 53.5
Sp2g12115 Schrenkiella parvula HOM05D006677 ORTHO05D008348 1.9e-230 803.1 791 50.8
AT5G47400 Arabidopsis thaliana HOM05D006677 ORTHO05D008348 9.2e-230 800.8 791 51.7
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 9.2e-230 800.8 786 51.8
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 2.1e-229 799.7 786 51.5
BcaC06g34255 Brassica carinata HOM05D006677 ORTHO05D008348 1.0e-228 797.3 790 51.3
Glyma.17G143800 Glycine max HOM05D006677 ORTHO05D008348 5.1e-228 795.0 787 52.7
ECA233G6125 Erigeron canadensis HOM05D006677 ORTHO05D008348 2.1e-226 789.6 737 55.6
Medtr4g100700 Medicago truncatula HOM05D006677 ORTHO05D008348 2.4e-222 776.2 795 50.9
A06p45110 Brassica napus HOM05D006677 ORTHO05D008348 4.2e-222 775.4 785 50.7
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.2e-221 773.9 753 52.3
Phvul.003G222500 Phaseolus vulgaris HOM05D006677 ORTHO05D008348 2.3e-220 769.6 787 52.9
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 2.5e-219 766.1 785 50.8
VMungo0251G0668 Vigna mungo HOM05D006677 ORTHO05D008348 1.3e-218 763.8 787 52.4
Psat4g072920 Pisum sativum HOM05D006677 ORTHO05D008348 9.3e-214 747.7 790 50.4
HPP92_022463 Vanilla planifolia HOM05D006677 ORTHO05D008348 1.0e-207 727.6 800 48.9
CDE11G0086 Ceratophyllum demersum HOM05D006677 ORTHO05D008348 2.0e-200 703.4 780 46.7
Eucgr.D02100 Eucalyptus grandis HOM05D006677 ORTHO05D008348 6.9e-193 678.3 585 58.1
BcaC06g31390 Brassica carinata HOM05D006677 ORTHO05D008348 5.9e-192 675.2 665 52.0
BcaC06g31392 Brassica carinata HOM05D006677 ORTHO05D008348 3.2e-190 669.5 775 47.0
Sabra01G0125500 Salix brachista HOM05D006677 ORTHO05D008348 1.8e-185 653.7 647 52.6
ATR0057G118 Amborella trichopoda HOM05D006677 ORTHO05D008348 3.3e-171 606.3 806 42.3
Glyma.05G062000 Glycine max HOM05D006677 ORTHO05D008348 2.8e-162 576.6 593 51.1
unitig_21.g20314 Utricularia gibba HOM05D006677 ORTHO05D008348 1.7e-159 567.4 783 42.9
Zm00001eb000330 Zea mays HOM05D006677 ORTHO05D008348 3.5e-152 543.1 776 42.4
Actinidia10841 Actinidia chinensis HOM05D006677 ORTHO05D008348 1.7e-135 487.6 783 39.8
Pp3c19_23280 Physcomitrium patens HOM05D006677 ORTHO05D008348 5.4e-105 386.3 865 33.9
TPR.G37689 Trifolium pratense HOM05D006677 ORTHO05D008348 3.9e-95 353.6 302 57.3
DCAR_004986 Daucus carota HOM05D006677 ORTHO05D008348 3.8e-90 337.0 286 59.1
DCAR_004979 Daucus carota HOM05D006677 ORTHO05D008348 8.4e-90 335.9 286 58.4
AagrBONN_evm.TU.Sc2ySwM_228.2440 Anthoceros agrestis HOM05D006677 ORTHO05D008348 1.3e-85 322.0 837 30.3
GSVIVG01006276001 Vitis vinifera HOM05D006677 ORTHO05D008348 1.1e-84 318.9 249 62.7
GSVIVG01006275001 Vitis vinifera HOM05D006677 ORTHO05D000005 6.9e-84 316.2 253 62.8
TPR.G36090 Trifolium pratense HOM05D006677 ORTHO05D008348 6.5e-82 309.7 410 43.2
Cpa.g.sc3684.1 Carica papaya HOM05D006677 ORTHO05D008348 1.8e-76 291.6 253 55.7
TAR365G0661 Trochodendron aralioides HOM05D006677 ORTHO05D008348 7.4e-70 269.6 275 50.5
TAR633G2042 Trochodendron aralioides HOM05D006677 ORTHO05D008348 5.3e-52 210.3 194 52.1
DCAR_004983 Daucus carota HOM05D006677 ORTHO05D008348 9.1e-52 209.5 224 50.0
DCAR_004974 Daucus carota HOM05D006677 ORTHO05D008348 2.9e-50 204.5 208 51.4
TAR629G1120 Trochodendron aralioides HOM05D006677 ORTHO05D008348 4.5e-43 180.6 140 64.3
CBR_g16835 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-41 173.7 1007 22.4
CAN.G26.36 Capsicum annuum HOM05D006677 ORTHO05D008348 8.3e-37 159.8 162 47.5
Os10g0560500 Oryza sativa ssp. japonica HOM05D006677 ORTHO05D008348 2.0e-35 155.2 258 39.1
DCAR_004984 Daucus carota HOM05D006677 ORTHO05D008348 8.9e-31 139.8 87 74.7
DCAR_004972 Daucus carota HOM05D006677 ORTHO05D008348 2.0e-22 112.1 116 50.9
Cre06.g278126 Chlamydomonas reinhardtii HOM05D006677 ORTHO05D008348 1.6e-16 92.4 170 34.7
MCO13G224 Micromonas commoda HOM05D006677 ORTHO05D008348 4.9e-13 80.9 141 34.8
CAN.G1178.24 Capsicum annuum HOM05D006677 ORTHO05D008348 9.2e-12 76.6 70 45.7
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 6.6e-10 70.5 54 57.4
ECA233G4789 Erigeron canadensis HOM05D006677 ORTHO05D008348 2.1e-08 65.5 50 64.0
ECA234G1619 Erigeron canadensis HOM05D000206 ORTHO05D000232 1.2e-06 59.7 161 32.9


User provided reference genes

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