Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 2.6e-136 488.8 262 100.0
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 87.8
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 3.6e-122 441.8 262 89.3
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 1.4e-121 439.9 262 87.4
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 88.2
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 87.4
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 86.6
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 87.4
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.2e-119 432.6 262 87.0
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 86.3
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 86.6
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 85.1
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 86.6
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 85.5
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 85.5
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 86.3
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 8.4e-119 430.6 264 87.9
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 85.5
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 85.9
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 85.5
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 85.9
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 85.1
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 85.5
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 85.5
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 85.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 7.1e-118 427.6 262 85.1
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.1
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.1
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.1
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 86.3
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.6e-117 426.4 261 85.1
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.6e-117 426.4 264 87.5
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.7
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.7
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 85.9
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 85.9
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 85.1
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 84.0
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 84.7
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 83.2
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 84.0
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 83.6
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 83.2
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 83.2
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 83.6
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 83.2
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 82.1
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.5e-115 419.1 262 82.1
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 84.4
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 82.1
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 83.2
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 82.1
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 82.8
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 85.1
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 82.1
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 84.4
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 82.8
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 82.8
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 82.8
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 82.8
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 82.8
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 83.2
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 3.7e-114 415.2 262 80.9
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.7e-114 415.2 262 82.4
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 83.2
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 82.8
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 82.4
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 4.0e-113 411.8 263 82.1
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 4.0e-113 411.8 262 82.1
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.2e-112 410.2 263 81.7
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.6e-112 409.1 262 80.5
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 4.5e-112 408.3 262 81.7
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 5.8e-112 407.9 259 83.0
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 7.6e-112 407.5 263 81.4
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 80.9
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 3.8e-111 405.2 262 79.8
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 3.8e-111 405.2 262 81.7
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.4e-110 403.3 262 80.9
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.4e-110 403.3 264 79.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 79.0
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.6e-109 399.8 262 76.7
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.1e-109 399.4 262 78.6
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 78.2
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 6.0e-109 397.9 263 78.7
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.0e-108 397.1 262 80.5
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 78.2
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 78.2
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 78.2
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.9e-107 392.9 263 78.7
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 76.7
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 1.8e-105 386.3 262 77.9
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.8e-105 386.3 250 78.8
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 77.5
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 77.5
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 77.5
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 77.5
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 77.5
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 3.1e-105 385.6 262 77.5
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 3.1e-105 385.6 262 77.5
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 3.1e-105 385.6 262 77.9
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 5.3e-105 384.8 262 77.5
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 5.3e-105 384.8 263 77.9
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 5.3e-105 384.8 262 77.1
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 77.1
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 77.1
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 76.3
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 6.9e-105 384.4 270 74.8
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 76.3
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.5e-104 383.3 241 84.2
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 77.1
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 77.1
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.6e-104 382.5 239 82.8
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 3.4e-104 382.1 263 78.7
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 4.5e-104 381.7 247 81.0
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 5.8e-104 381.3 262 76.7
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 5.8e-104 381.3 263 78.7
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 5.8e-104 381.3 247 81.0
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 7.6e-104 380.9 262 77.1
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 77.1
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.7e-103 379.8 263 76.8
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.7e-103 379.8 263 76.8
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.7e-103 379.8 263 76.8
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.7e-103 379.8 262 77.1
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 2.2e-103 379.4 262 75.6
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 5.5e-102 374.8 270 71.5
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.2e-101 373.6 263 76.4
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.0e-100 370.5 263 77.6
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.3e-100 370.2 263 77.2
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 2.3e-100 369.4 264 76.9
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 2.3e-100 369.4 263 77.6
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 9.0e-97 357.5 248 76.6
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 2.6e-96 355.9 218 86.2
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.4e-96 355.5 262 73.3
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 5.9e-96 354.8 249 73.5
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.3e-95 353.6 262 73.3
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.7e-93 345.9 234 77.4
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.8e-92 343.2 210 85.2
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 8.8e-92 340.9 214 84.6
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 2.2e-90 336.3 240 76.2
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 8.2e-90 334.3 236 72.9
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 4.1e-89 332.0 219 77.2
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 6.9e-89 331.3 219 76.3
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.6e-88 329.3 264 67.0
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 5.5e-86 321.6 262 67.9
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.7e-85 319.3 217 76.0
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 7.9e-85 317.8 267 64.4
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.7e-79 300.1 253 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 3.2e-78 295.8 218 70.2
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.1e-77 291.6 250 67.6
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.7e-75 285.0 245 59.6
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 9.1e-73 277.7 247 63.2
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 9.1e-73 277.7 208 68.8
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 5.0e-71 271.9 204 72.1
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 6.5e-71 271.6 262 62.2
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.4e-68 263.8 263 59.3
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 7.5e-67 258.1 271 54.6
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.4e-65 253.8 211 63.0
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.8e-58 228.8 235 60.0
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.5e-54 216.5 243 50.6
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 5.5e-54 215.3 130 83.8
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.8e-50 203.0 120 87.5
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.7e-50 202.6 248 47.6
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 7.8e-48 194.9 138 75.4
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.0e-47 194.5 179 61.5
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.4e-41 174.1 118 78.0
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.6e-35 153.3 141 63.8
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 6.4e-34 148.7 191 47.6
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.0e-31 139.8 96 75.0
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.3e-23 114.4 69 87.0


User provided reference genes

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