Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 1.9e-125 452.6 235 100.0
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 8.1e-89 330.9 235 71.5
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 1.5e-87 326.6 235 71.9
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 4.9e-86 321.6 235 71.5
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.5e-82 309.3 198 76.3
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 3.3e-82 308.9 187 80.2
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.6e-81 306.6 198 76.3
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 5.1e-75 285.0 227 63.4
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 7.4e-74 281.2 230 62.2
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 9.6e-74 280.8 237 61.6
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 1.6e-73 280.0 235 60.0
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.8e-73 279.3 237 61.2
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.8e-73 278.5 196 67.9
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.1e-72 275.4 210 63.8
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 9.0e-72 274.2 235 60.4
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 3.4e-71 272.3 231 60.6
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 4.5e-71 271.9 235 61.3
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.3e-70 270.4 235 60.4
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.7e-70 270.0 235 61.7
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 2.9e-70 269.2 235 60.9
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 2.7e-68 262.7 230 59.6
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 3.5e-68 262.3 230 59.1
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 4.6e-68 261.9 230 59.1
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.3e-67 259.6 264 54.2
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 3.0e-67 259.2 230 59.6
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 1.1e-66 257.3 230 59.1
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.5e-66 256.9 230 57.8
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 7.4e-66 254.6 222 57.7
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 9.7e-66 254.2 195 65.1
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.3e-65 253.8 230 58.3
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 1.3e-65 253.8 236 58.1
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 1.6e-65 253.4 230 57.4
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 3.7e-65 252.3 235 57.0
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 8.2e-65 251.1 226 55.3
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 1.1e-64 250.8 236 58.1
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.1e-64 250.8 254 53.9
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.4e-64 250.4 230 56.5
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 3.1e-64 249.2 205 61.5
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 3.1e-64 249.2 232 55.6
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 3.1e-64 249.2 197 61.4
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 9.0e-64 247.7 198 62.6
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 9.0e-64 247.7 226 57.1
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.2e-63 247.3 194 64.4
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.5e-63 246.9 230 56.5
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 2.0e-63 246.5 231 57.6
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 2.6e-63 246.1 237 55.3
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 2.6e-63 246.1 194 62.9
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.9e-63 245.0 231 55.8
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.9e-63 245.0 231 55.8
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 7.7e-63 244.6 231 55.8
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.3e-62 243.8 231 58.4
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.3e-62 243.8 194 60.8
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 1.3e-62 243.8 232 56.9
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.3e-62 243.8 231 55.4
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 1.3e-62 243.8 227 56.8
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.7e-62 243.4 230 54.8
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 2.2e-62 243.0 226 56.2
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.9e-62 242.7 232 56.5
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 6.5e-62 241.5 231 53.2
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 8.5e-62 241.1 182 63.7
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.1e-61 240.7 231 57.6
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.1e-61 240.7 235 54.5
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.9e-61 240.0 230 52.6
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.5e-61 239.6 184 62.0
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 2.5e-61 239.6 235 55.3
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 2.5e-61 239.6 219 59.8
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 3.2e-61 239.2 229 55.5
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 7.2e-61 238.0 233 56.7
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 7.2e-61 238.0 230 56.1
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 9.4e-61 237.7 231 52.4
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.2e-60 237.3 236 53.4
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.6e-60 236.9 201 59.2
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.7e-60 236.1 200 58.0
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 7.9e-60 234.6 230 52.2
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.8e-59 233.4 195 59.5
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.1e-58 230.7 230 55.7
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 1.5e-58 230.3 230 53.0
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.0e-58 229.9 230 53.5
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 4.3e-58 228.8 196 56.1
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 5.7e-58 228.4 194 57.2
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 5.7e-58 228.4 231 51.9
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 9.7e-58 227.6 194 54.1
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 1.3e-57 227.3 233 55.4
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.2e-57 226.5 230 53.9
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 1.4e-56 223.8 194 55.2
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.4e-56 223.8 235 56.6
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 1.8e-56 223.4 194 53.6
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 5.3e-56 221.9 194 55.7
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.5e-55 220.3 194 52.6
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 4.5e-55 218.8 195 57.9
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 4.5e-55 218.8 194 53.6
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 4.5e-55 218.8 194 53.6
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 4.5e-55 218.8 231 51.1
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 5.9e-55 218.4 202 56.9
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.0e-54 217.6 182 55.5
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.7e-54 216.9 182 55.5
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 2.2e-54 216.5 194 53.1
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 2.9e-54 216.1 234 51.3
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.4e-53 213.8 219 53.4
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 7.2e-53 211.5 235 51.1
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 2.7e-52 209.5 242 47.1
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 2.7e-52 209.5 195 53.8
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 4.7e-52 208.8 182 53.3
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 6.1e-52 208.4 193 53.4
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.0e-51 207.6 233 48.9
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 5.1e-51 205.3 176 58.5
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 6.7e-51 204.9 152 63.8
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.5e-50 203.8 176 58.5
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 1.5e-50 203.8 255 50.6
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 3.3e-50 202.6 157 63.7
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 9.7e-50 201.1 244 46.3
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 9.7e-50 201.1 244 46.3
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 1.3e-49 200.7 244 46.3
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 6.3e-49 198.4 187 54.0
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 8.2e-49 198.0 231 47.2
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 7.0e-48 194.9 124 75.8
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 9.1e-48 194.5 262 43.9
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 1.7e-46 190.3 232 49.1
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 6.5e-46 188.3 183 51.9
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.5e-45 187.2 183 52.5
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 4.7e-44 182.2 131 67.9
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 2.6e-42 176.4 176 50.6
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.2e-41 173.3 142 57.7
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 7.7e-39 164.9 234 42.3
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 5.0e-38 162.2 231 42.9
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.0e-34 150.2 236 41.5
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 2.2e-33 146.7 154 48.1
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 1.4e-32 144.1 256 38.7
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 4.1e-32 142.5 238 39.5
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 4.5e-31 139.0 223 38.6
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.1e-29 134.4 115 58.3
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.5e-29 134.0 193 40.4
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 6.8e-27 125.2 183 39.3
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 6.8e-27 125.2 184 39.7
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 2.8e-25 119.8 200 38.0
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.2e-23 114.4 76 73.7
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 1.5e-21 107.5 164 38.4
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 5.7e-18 95.5 88 54.5
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 2.7e-15 86.7 95 49.5
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 3.4e-10 69.7 63 47.6
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 4.4e-10 69.3 138 34.1
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 2.4e-08 63.5 176 26.7


User provided reference genes

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