Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1201 Avicennia marina HOM05D007166 ORTHO05D009039 5.2e-71 271.2 160 100.0
Oeu007334.1 Olea europaea HOM05D007166 ORTHO05D009039 3.2e-52 208.8 159 83.0
Cc10_g01790 Coffea canephora HOM05D007166 ORTHO05D009039 7.1e-52 207.6 160 78.1
QL02p011380 Quercus lobata HOM05D007166 ORTHO05D009039 9.2e-52 207.2 159 79.2
Dinv31833 Davidia involucrata HOM05D007166 ORTHO05D009039 1.2e-51 206.8 159 81.8
SGA_v2.0_scaffold92G28245 Striga asiatica HOM05D007166 ORTHO05D009039 2.7e-51 205.7 152 82.9
Sopen04g034940 Solanum pennellii HOM05D007166 ORTHO05D009039 3.0e-50 202.2 161 77.0
Thecc.08G042800 Theobroma cacao HOM05D007166 ORTHO05D009039 5.1e-50 201.4 158 79.1
Haze_22621 Corylus avellana HOM05D007166 ORTHO05D009039 1.1e-49 200.3 160 78.8
MD15G1013500 Malus domestica HOM05D007166 ORTHO05D009039 1.5e-49 199.9 161 78.3
Peaxi162Scf00438g00619 Petunia axillaris HOM05D007166 ORTHO05D009039 1.9e-49 199.5 158 77.8
MELO3C003759.2 Cucumis melo HOM05D007166 ORTHO05D009039 2.5e-49 199.1 158 77.2
Solyc04g081320.4 Solanum lycopersicum HOM05D007166 ORTHO05D009039 2.5e-49 199.1 161 76.4
unitig_46.g17964 Utricularia gibba HOM05D007166 ORTHO05D009039 2.5e-49 199.1 160 76.2
Duzib116G0210 Durio zibethinus HOM05D007166 ORTHO05D009039 3.3e-49 198.7 159 77.4
CiPaw.08G065500 Carya illinoinensis HOM05D007166 ORTHO05D009039 4.3e-49 198.4 159 78.0
GSVIVG01009888001 Vitis vinifera HOM05D007166 ORTHO05D009039 7.3e-49 197.6 159 78.0
Duzib093G1587 Durio zibethinus HOM05D007166 ORTHO05D009039 9.5e-49 197.2 158 76.6
Prupe.1G367000 Prunus persica HOM05D007166 ORTHO05D009039 9.5e-49 197.2 161 77.0
Potri.002G023600 Populus trichocarpa HOM05D007166 ORTHO05D009039 1.2e-48 196.8 160 78.1
CAN.G311.15 Capsicum annuum HOM05D007166 ORTHO05D009039 1.6e-48 196.4 158 75.3
COL.COLO4_26159 Corchorus olitorius HOM05D007166 ORTHO05D009039 2.1e-48 196.1 159 78.0
Migut.C00807 Erythranthe guttata HOM05D007166 ORTHO05D009039 2.1e-48 196.1 154 80.5
Sabra02G0019200 Salix brachista HOM05D007166 ORTHO05D009039 2.1e-48 196.1 160 77.5
CsaV3_3G045770 Cucumis sativus L. HOM05D007166 ORTHO05D009039 2.8e-48 195.7 158 75.3
Atru.chr13.311 Acer truncatum HOM05D007166 ORTHO05D009039 3.6e-48 195.3 165 74.5
Gorai.010G005000 Gossypium raimondii HOM05D007166 ORTHO05D009039 3.6e-48 195.3 158 76.6
Sed0018016 Sechium edule HOM05D007166 ORTHO05D009039 4.7e-48 194.9 157 74.5
Gohir.D06G000600 Gossypium hirsutum HOM05D007166 ORTHO05D009039 6.2e-48 194.5 158 76.6
PGR031G2037 Punica granatum HOM05D007166 ORTHO05D009039 8.1e-48 194.1 162 75.3
CANSAT25G3739 Cannabis sativa HOM05D007166 ORTHO05D009039 1.8e-47 193.0 166 73.5
Gohir.A06G004800 Gossypium hirsutum HOM05D007166 ORTHO05D009039 4.0e-47 191.8 158 75.3
Potri.005G237800 Populus trichocarpa HOM05D007166 ORTHO05D009039 1.5e-46 189.9 161 75.8
RcHm_v2.0_Chr6g0302691 Rosa chinensis HOM05D007166 ORTHO05D009039 1.5e-46 189.9 158 75.3
TWI56G1425 Tripterygium wilfordii HOM05D007166 ORTHO05D009039 9.9e-46 187.2 151 76.8
ClCG05G018350 Citrullus lanatus HOM05D007166 ORTHO05D009039 1.7e-45 186.4 151 75.5
CSS0019896 Camellia sinensis var. sinensis HOM05D007166 ORTHO05D009039 2.9e-45 185.7 158 75.3
THA.LOC104813791 Tarenaya hassleriana HOM05D007166 ORTHO05D009039 2.9e-45 185.7 161 75.2
Nn5g29333 Nelumbo nucifera HOM05D007166 ORTHO05D009039 3.8e-45 185.3 155 75.5
Rhsim06G0022200 Rhododendron simsii HOM05D007166 ORTHO05D009039 1.4e-44 183.3 158 73.4
Eucgr.F00601 Eucalyptus grandis HOM05D007166 ORTHO05D009039 4.2e-44 181.8 160 73.8
PGSC0003DMG400003776 Solanum tuberosum HOM05D007166 ORTHO05D009039 5.4e-44 181.4 194 53.6
FAN20G1945 Fragaria x ananassa HOM05D007166 ORTHO05D009039 9.2e-44 180.6 171 69.6
MD08G1014000 Malus domestica HOM05D007166 ORTHO05D009039 1.2e-43 180.3 154 75.3
Glyma.14G218200 Glycine max HOM05D007166 ORTHO05D009039 2.7e-43 179.1 150 74.0
Medtr1g024840 Medicago truncatula HOM05D007166 ORTHO05D009039 3.5e-43 178.7 150 75.3
Carub.0002s2253 Capsella rubella HOM05D007166 ORTHO05D009039 4.6e-43 178.3 157 73.2
Aa31LG4G5920 Aethionema arabicum HOM05D007166 ORTHO05D009039 1.3e-42 176.8 152 75.0
AT1G75690 Arabidopsis thaliana HOM05D007166 ORTHO05D009039 1.3e-42 176.8 158 72.8
FvH4_2g38630 Fragaria vesca HOM05D007166 ORTHO05D009039 1.3e-42 176.8 151 74.2
TAR628G0810 Trochodendron aralioides HOM05D007166 ORTHO05D009039 1.3e-42 176.8 151 76.8
Sp5g30800 Schrenkiella parvula HOM05D007166 ORTHO05D009039 2.3e-42 176.0 159 73.0
CARHR069090 Cardamine hirsuta HOM05D007166 ORTHO05D009039 3.0e-42 175.6 158 72.2
Lalb_Chr22g0354371 Lupinus albus HOM05D007166 ORTHO05D009039 3.0e-42 175.6 161 72.0
HanXRQChr05g0146521 Helianthus annuus HOM05D007166 ORTHO05D009039 3.9e-42 175.3 155 74.8
BcaC08g47053 Brassica carinata HOM05D007166 ORTHO05D009039 5.1e-42 174.9 159 69.8
Glyma.17G257400 Glycine max HOM05D007166 ORTHO05D009039 5.1e-42 174.9 150 74.0
VMungo0647G2551 Vigna mungo HOM05D007166 ORTHO05D009039 6.6e-42 174.5 149 73.8
Phvul.001G007500 Phaseolus vulgaris HOM05D007166 ORTHO05D009039 1.5e-41 173.3 121 86.0
Actinidia15414 Actinidia chinensis HOM05D007166 ORTHO05D009039 3.3e-41 172.2 152 75.0
Lj4A797T62 Lonicera japonica HOM05D007166 ORTHO05D009039 3.3e-41 172.2 167 68.9
FAN15G1492 Fragaria x ananassa HOM05D007166 ORTHO05D009039 4.3e-41 171.8 199 60.3
Lsat_1_v5_gn_9_46261 Lactuca sativa HOM05D007166 ORTHO05D009039 7.3e-41 171.0 160 70.6
Manes.18G014600 Manihot esculenta HOM05D007166 ORTHO05D009039 7.3e-41 171.0 159 73.6
PSO700G0103 Papaver somniferum HOM05D007166 ORTHO05D009039 9.6e-41 170.6 152 69.7
DCAR_017474 Daucus carota HOM05D007166 ORTHO05D009039 1.6e-40 169.9 154 74.0
PSO170G1901 Papaver somniferum HOM05D007166 ORTHO05D009039 1.6e-40 169.9 153 71.2
TPR.G34359 Trifolium pratense HOM05D007166 ORTHO05D009039 2.1e-40 169.5 153 70.6
Thhalv10019268m.g Eutrema salsugineum HOM05D007166 ORTHO05D009039 2.8e-40 169.1 158 70.3
AL2G35670 Arabidopsis lyrata HOM05D007166 ORTHO05D009039 8.1e-40 167.5 159 71.7
BcaC03g15610 Brassica carinata HOM05D007166 ORTHO05D009039 3.1e-39 165.6 151 73.5
BolC6t40002H Brassica oleracea HOM05D007166 ORTHO05D009039 1.5e-38 163.3 152 68.4
A07p41210 Brassica napus HOM05D007166 ORTHO05D009039 2.6e-38 162.5 155 67.7
Os03g0244000 Oryza sativa ssp. japonica HOM05D007166 ORTHO05D009039 4.4e-38 161.8 149 69.8
ECA232G5036 Erigeron canadensis HOM05D007166 ORTHO05D009039 7.6e-38 161.0 161 65.2
C06p49630 Brassica napus HOM05D007166 ORTHO05D009039 9.9e-38 160.6 152 67.1
BraA07t31656Z Brassica rapa HOM05D007166 ORTHO05D009039 1.3e-37 160.2 152 67.8
HPP92_015209 Vanilla planifolia HOM05D007166 ORTHO05D009039 1.3e-37 160.2 158 67.7
EL10Ac5g11627 Beta vulgaris HOM05D007166 ORTHO05D009039 1.7e-37 159.8 154 70.8
Zm00001eb081060 Zea mays HOM05D007166 ORTHO05D009039 6.4e-37 157.9 126 78.6
arahy.Tifrunner.gnm1.ann1.74SAHL Arachis hypogaea HOM05D007166 ORTHO05D009039 4.2e-36 155.2 148 71.6
BraA02t07050Z Brassica rapa HOM05D007166 ORTHO05D009039 4.2e-36 155.2 143 67.8
Lj5g0017261 Lotus japonicus HOM05D007166 ORTHO05D009039 9.3e-36 154.1 198 57.6
A02p20150 Brassica napus HOM05D007166 ORTHO05D009039 1.2e-35 153.7 143 67.1
C02p33780 Brassica napus HOM05D007166 ORTHO05D009039 2.7e-35 152.5 144 71.5
BolC2t09326H Brassica oleracea HOM05D007166 ORTHO05D009039 2.7e-35 152.5 144 68.8
CDE02G4515 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 6.0e-35 151.4 126 74.6
Nitab4.5_0001540g0050 Nicotiana tabacum HOM05D007166 ORTHO05D009039 7.8e-35 151.0 154 57.1
Pp3c22_16100 Physcomitrium patens HOM05D007166 ORTHO05D009039 2.5e-33 146.0 141 64.5
AagrBONN_evm.TU.Sc2ySwM_369.321 Anthoceros agrestis HOM05D007166 ORTHO05D009039 7.3e-33 144.4 124 69.4
Pp3s104_40 Physcomitrium patens HOM05D007166 ORTHO05D009039 1.4e-31 140.2 115 73.0
Ciclev10002412m.g Citrus clementina HOM05D007166 ORTHO05D009039 2.4e-31 139.4 172 51.2
Mapoly0005s0157 Marchantia polymorpha HOM05D007166 ORTHO05D009039 3.1e-31 139.0 119 73.9
Cfa013938 Carpinus fangiana HOM05D007166 ORTHO05D009039 7.6e-30 134.4 185 45.9
AUR62036485 Chenopodium quinoa HOM05D007166 ORTHO05D009039 1.3e-29 133.7 145 66.2
SMO165G0060 Selaginella moellendorffii HOM05D007166 ORTHO05D009039 2.2e-29 132.9 115 69.6
Cpa.g.sc1059.4 Carica papaya HOM05D007166 ORTHO05D009039 7.9e-27 124.4 103 66.0
AUR62037091 Chenopodium quinoa HOM05D007166 ORTHO05D009039 5.1e-26 121.7 131 57.3
CDE02G3586 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 8.7e-26 120.9 82 68.3
CBR_g44435 Chara braunii HOM05D007166 ORTHO05D009039 1.3e-24 117.1 124 61.3
BcaB05g24933 Brassica carinata HOM05D007166 ORTHO05D009039 8.1e-24 114.4 139 48.9
HPP92_015221 Vanilla planifolia HOM05D007166 ORTHO05D009039 9.3e-20 100.9 98 58.2
arahy.Tifrunner.gnm1.ann1.MS74EG Arachis hypogaea HOM05D007166 ORTHO05D009039 3.9e-18 95.5 149 44.3
Aqoxy5G01769 Aquilegia oxysepala HOM05D007166 ORTHO05D009039 6.9e-15 84.7 94 51.1
Thecc.09G255600 Theobroma cacao HOM05D007166 ORTHO05D009039 4.5e-14 82.0 96 53.1
Hund05201 Selenicereus undatus HOM05D007166 ORTHO05D009039 5.8e-14 81.6 58 69.0
ATR0912G003 Amborella trichopoda HOM05D007166 ORTHO05D009039 1.8e-10 70.1 60 56.7
EL10Ac4g08279 Beta vulgaris HOM05D007166 ORTHO05D009039 1.4e-07 60.5 65 56.9
MBI09_g08444_MAGBIO Magnolia biondii HOM05D007166 ORTHO05D009039 1.4e-07 60.5 96 38.5


User provided reference genes

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