Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 0.0e+00 1092.0 535 100.0
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 2.0e-292 1008.4 535 90.3
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 1.6e-286 988.8 536 88.8
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 1.1e-282 976.1 535 88.2
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.7e-275 952.2 535 85.8
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 1.4e-269 932.6 536 83.0
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 6.9e-269 930.2 535 84.1
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 5.8e-268 927.2 532 83.6
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 7.6e-268 926.8 532 83.3
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.0e-267 926.4 535 83.6
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.0e-267 926.4 535 83.6
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 2.2e-267 925.2 536 84.0
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 3.8e-267 924.5 536 82.8
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 3.8e-267 924.5 532 83.3
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 1.1e-266 922.9 536 82.5
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 4.2e-266 921.0 535 83.2
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 9.3e-266 919.8 535 81.3
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 2.1e-265 918.7 535 81.7
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 3.5e-265 917.9 535 82.6
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 3.5e-265 917.9 535 82.6
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 2.3e-264 915.2 535 81.1
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 3.0e-264 914.8 535 80.9
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 6.7e-264 913.7 536 82.6
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 6.7e-264 913.7 535 81.5
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 2.5e-263 911.8 531 82.5
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 7.4e-263 910.2 535 80.4
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 1.3e-262 909.4 528 82.8
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 3.7e-262 907.9 534 80.5
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 6.3e-262 907.1 535 80.0
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 6.3e-262 907.1 535 80.9
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 8.2e-262 906.7 535 81.5
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.1e-261 906.4 535 80.6
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.4e-261 905.2 537 81.0
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 2.4e-261 905.2 535 80.4
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 3.1e-261 904.8 535 79.8
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 4.1e-261 904.4 535 80.4
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 4.1e-261 904.4 535 80.6
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 5.3e-261 904.0 535 80.0
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 1.2e-260 902.9 535 80.4
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.5e-260 902.5 535 80.6
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 2.0e-260 902.1 535 79.8
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 3.4e-260 901.4 535 80.4
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 3.4e-260 901.4 553 79.7
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 3.4e-260 901.4 540 80.4
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 5.9e-260 900.6 537 80.1
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 5.9e-260 900.6 534 82.2
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 7.6e-260 900.2 535 80.6
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 1.0e-259 899.8 535 79.1
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 1.3e-259 899.4 535 80.6
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.3e-259 899.4 535 80.4
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.7e-259 899.0 535 80.2
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 2.2e-259 898.7 531 80.6
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 2.9e-259 898.3 535 79.4
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 2.9e-259 898.3 535 80.6
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 5.0e-259 897.5 529 81.3
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 8.5e-259 896.7 553 78.8
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 1.4e-258 896.0 536 82.1
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 3.2e-258 894.8 535 79.6
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 4.2e-258 894.4 537 79.1
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.2e-257 892.9 535 79.4
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.1e-257 892.1 535 79.6
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 2.1e-257 892.1 535 79.1
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 2.7e-257 891.7 539 82.2
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 3.6e-257 891.3 535 79.3
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 1.0e-256 889.8 535 79.1
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 1.3e-256 889.4 535 78.9
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.8e-256 889.0 542 78.8
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 3.0e-256 888.3 535 78.7
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 5.1e-256 887.5 535 79.4
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 5.1e-256 887.5 535 80.4
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.7e-256 887.1 535 78.9
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 1.5e-255 885.9 535 78.5
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.5e-255 885.9 532 79.7
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 1.9e-255 885.6 535 78.9
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 2.5e-255 885.2 535 78.1
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 7.4e-255 883.6 536 79.3
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 7.4e-255 883.6 535 78.9
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 7.4e-255 883.6 535 78.1
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 9.7e-255 883.2 536 79.1
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 9.7e-255 883.2 529 79.6
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 2.8e-254 881.7 536 79.3
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 3.7e-254 881.3 535 78.7
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 3.7e-254 881.3 535 78.5
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 4.8e-254 880.9 535 77.6
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.1e-253 879.8 530 78.7
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 9.1e-253 876.7 536 78.7
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 1.2e-252 876.3 528 78.8
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 2.0e-252 875.5 535 77.2
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.6e-252 875.2 536 78.4
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 3.4e-252 874.8 535 78.1
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 3.4e-252 874.8 535 78.1
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 4.5e-252 874.4 528 78.6
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 8.5e-251 870.2 529 77.5
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.4e-250 869.4 537 77.7
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 3.2e-250 868.2 535 77.6
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 7.9e-249 863.6 535 77.0
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.4e-248 862.8 535 77.0
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 1.4e-248 862.8 537 77.5
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.3e-248 862.1 535 77.8
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 3.0e-248 861.7 535 77.0
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 3.0e-248 861.7 535 76.8
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 4.4e-247 857.8 535 76.6
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 5.7e-247 857.4 535 76.6
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.8e-246 855.1 682 65.4
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 9.1e-245 850.1 528 75.6
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 2.6e-244 848.6 529 75.4
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 2.2e-243 845.5 528 75.2
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 5.2e-240 834.3 534 74.5
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 1.1e-237 826.6 496 79.8
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 2.4e-237 825.5 535 75.3
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 3.5e-236 821.6 666 65.0
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 2.2e-235 818.9 494 79.8
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 9.7e-231 803.5 493 79.1
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.3e-227 793.1 559 69.4
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 2.0e-223 779.2 534 69.7
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 3.1e-221 771.9 527 69.3
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 1.6e-220 769.6 533 67.0
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 3.5e-212 741.9 535 65.0
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 1.1e-210 736.9 532 65.6
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 4.7e-209 731.5 536 69.8
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 5.6e-202 708.0 525 62.9
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 4.1e-197 691.8 441 77.1
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 1.6e-196 689.9 527 62.0
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 2.0e-191 672.9 404 77.5
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 7.5e-191 671.0 525 62.1
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 7.5e-191 671.0 499 64.7
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 4.1e-181 638.6 374 79.9
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 9.9e-175 617.5 495 64.2
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.6e-167 592.8 420 68.6
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 1.3e-161 573.9 703 49.6
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 7.4e-138 495.0 293 79.9
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 8.2e-137 491.5 536 50.7
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 5.7e-122 442.2 312 70.2
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.8e-120 437.2 536 46.8
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 4.7e-100 369.4 409 49.4
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 5.6e-93 345.9 262 63.7
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 5.6e-77 292.7 184 75.5
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 9.6e-61 238.8 148 77.7
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.5e-58 231.5 148 71.6
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 1.6e-44 184.9 140 66.4
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 5.5e-40 169.9 179 49.2
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 3.3e-37 160.6 94 80.9
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 4.3e-37 160.2 108 71.3
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 2.9e-33 147.5 87 81.6
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 1.1e-32 145.6 103 69.9
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 2.0e-21 108.2 97 61.9
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 4.1e-19 100.5 64 71.9
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 1.3e-12 79.0 60 63.3
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 1.8e-11 75.1 46 71.7
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 1.1e-08 65.9 45 68.9
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 1.1e-08 65.9 41 73.2
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 1.1e-08 65.9 42 71.4
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 1.1e-08 65.9 42 71.4
PGR042G1447 Punica granatum HOM05D001661 ORTHO05D001575 5.5e-08 63.5 109 31.2
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 5.5e-08 63.5 48 68.8
THA.LOC104820363 Tarenaya hassleriana HOM05D003754 ORTHO05D004530 4.7e-07 60.5 189 28.0
Lj5A229G54 Lonicera japonica HOM05D001661 ORTHO05D001575 1.0e-06 59.3 110 35.5
Hma1.2p1_1882F.1_g306410 Hydrangea macrophylla HOM05D003754 ORTHO05D004530 1.8e-06 58.5 193 29.5
PGR142G3356 Punica granatum HOM05D001661 ORTHO05D001575 1.8e-06 58.5 109 31.2
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 1.8e-06 58.5 83 49.4
Duzib187G0686 Durio zibethinus HOM05D003754 ORTHO05D004530 2.3e-06 58.2 189 28.0
Duzib187G1293 Durio zibethinus HOM05D003754 ORTHO05D004530 2.3e-06 58.2 189 28.0
Gohir.D11G058200 Gossypium hirsutum HOM05D003754 ORTHO05D004530 2.3e-06 58.2 193 28.5
CiPaw.03G124200 Carya illinoinensis HOM05D003754 ORTHO05D004530 3.0e-06 57.8 187 27.8
Glyma.05G188500 Glycine max HOM05D003754 ORTHO05D004530 3.0e-06 57.8 184 29.9
Hund00470 Selenicereus undatus HOM05D003754 ORTHO05D004530 3.0e-06 57.8 180 28.3
Carub.0005s0630 Capsella rubella HOM05D003754 ORTHO05D004530 3.9e-06 57.4 189 28.0
Eucgr.I02609 Eucalyptus grandis HOM05D001661 ORTHO05D001575 3.9e-06 57.4 128 28.9
Glyma.13G255900 Glycine max HOM05D001661 ORTHO05D001575 3.9e-06 57.4 136 29.4
CANSAT01G2639 Cannabis sativa HOM05D003754 ORTHO05D004530 5.2e-06 57.0 195 26.7
Cpa.g.sc42.92 Carica papaya HOM05D003754 ORTHO05D004530 5.2e-06 57.0 188 28.7
Duzib264G0672 Durio zibethinus HOM05D003754 ORTHO05D004530 5.2e-06 57.0 193 29.0
Gorai.007G063500 Gossypium raimondii HOM05D003754 ORTHO05D004530 5.2e-06 57.0 193 29.5
Actinidia00313 Actinidia chinensis HOM05D001661 ORTHO05D001575 6.7e-06 56.6 131 31.3
COL.COLO4_22427 Corchorus olitorius HOM05D003754 ORTHO05D004530 6.7e-06 56.6 193 29.0
Eucgr.I02608 Eucalyptus grandis HOM05D001661 ORTHO05D001575 6.7e-06 56.6 106 33.0
Lj1g0021659 Lotus japonicus HOM05D003754 ORTHO05D004530 6.7e-06 56.6 180 28.3
Lalb_Chr13g0296421 Lupinus albus HOM05D003754 ORTHO05D004530 8.8e-06 56.2 180 28.9


User provided reference genes

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