Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 6.5e-157 557.4 288 100.0
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 1.5e-129 466.5 288 80.6
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 3.7e-128 461.8 288 79.2
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 1.2e-121 440.3 283 76.3
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 1.2e-121 440.3 288 74.0
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 1.5e-121 439.9 288 77.1
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 2.6e-121 439.1 288 75.0
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 3.4e-121 438.7 288 75.3
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 9.9e-121 437.2 288 75.0
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 9.9e-121 437.2 282 77.0
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 1.3e-120 436.8 288 75.0
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 1.7e-120 436.4 288 76.7
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 1.7e-120 436.4 288 75.0
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 3.7e-120 435.3 288 76.0
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 3.7e-120 435.3 288 76.7
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 6.4e-120 434.5 288 76.0
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.1e-119 433.7 288 76.0
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 3.2e-119 432.2 288 75.0
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 4.1e-119 431.8 288 74.7
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 4.1e-119 431.8 288 75.3
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 7.1e-119 431.0 284 75.4
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 3.5e-118 428.7 288 74.3
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 7.8e-118 427.6 288 74.7
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 1.3e-117 426.8 288 73.6
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 2.3e-117 426.0 284 73.9
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 3.0e-117 425.6 288 72.2
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 5.1e-117 424.9 284 72.9
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 1.1e-116 423.7 288 71.2
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 1.1e-116 423.7 288 72.9
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 2.8e-115 419.1 288 70.1
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 4.7e-115 418.3 288 73.6
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 4.7e-115 418.3 288 70.5
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 6.2e-115 417.9 288 73.6
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 3.1e-114 415.6 288 69.8
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 3.1e-114 415.6 288 70.5
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 6.8e-114 414.5 289 69.9
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 1.2e-113 413.7 288 72.9
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 2.6e-113 412.5 284 71.5
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 2.6e-113 412.5 288 70.8
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 5.8e-113 411.4 288 70.5
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 1.3e-112 410.2 283 72.4
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 1.7e-112 409.8 288 70.8
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 1.2e-110 403.7 282 70.6
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 1.2e-110 403.7 288 68.4
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 4.6e-110 401.7 288 69.4
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 2.3e-109 399.4 426 53.3
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 2.5e-108 396.0 288 68.8
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 5.6e-108 394.8 287 66.2
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 9.6e-108 394.0 287 66.9
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 9.6e-108 394.0 287 67.2
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 2.1e-107 392.9 282 68.8
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 2.1e-107 392.9 282 69.1
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 2.8e-107 392.5 283 67.1
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 3.6e-107 392.1 322 62.4
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 4.8e-107 391.7 288 68.8
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 8.1e-107 391.0 287 67.6
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 8.1e-107 391.0 287 66.9
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 1.1e-106 390.6 282 68.1
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 2.4e-106 389.4 279 68.5
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 2.4e-106 389.4 287 66.6
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 2.4e-106 389.4 287 66.6
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 2.4e-106 389.4 287 66.6
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 6.9e-106 387.9 287 66.2
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 1.5e-105 386.7 288 67.0
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 2.6e-105 386.0 288 66.7
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 3.4e-105 385.6 279 67.0
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 3.4e-105 385.6 287 66.6
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 1.7e-104 383.3 249 75.5
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 1.7e-104 383.3 282 66.0
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 1.1e-103 380.6 282 67.0
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.4e-103 380.2 264 70.8
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 2.4e-103 379.4 252 71.0
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 2.4e-103 379.4 283 67.5
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 5.4e-103 378.3 283 65.7
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 3.5e-102 375.6 288 65.6
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 3.5e-102 375.6 282 63.8
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 2.3e-101 372.9 249 73.9
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 3.0e-101 372.5 282 64.5
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 1.5e-100 370.2 236 78.4
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 1.9e-100 369.8 283 64.3
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 1.9e-100 369.8 279 66.3
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 5.6e-100 368.2 280 65.7
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 9.6e-100 367.5 301 64.8
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 3.1e-98 362.5 287 64.1
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 4.0e-98 362.1 287 64.1
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 1.2e-97 360.5 348 57.2
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 7.6e-97 357.8 280 63.2
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 9.9e-97 357.5 288 62.2
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 1.3e-96 357.1 288 65.3
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 2.1e-94 349.7 283 60.4
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 5.6e-92 341.7 279 63.8
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 9.6e-92 340.9 284 58.8
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 8.1e-91 337.8 273 61.9
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 3.1e-90 335.9 284 59.5
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 5.5e-87 325.1 236 68.2
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 1.2e-86 323.9 319 53.0
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 6.0e-86 321.6 221 71.0
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 2.1e-83 313.2 195 77.9
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 2.4e-82 309.7 284 53.9
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 1.7e-80 303.5 290 59.7
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 2.3e-77 293.1 243 63.0
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 5.1e-77 292.0 282 52.5
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 1.3e-75 287.3 279 52.7
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 3.7e-75 285.8 199 67.3
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 3.2e-55 219.5 143 74.8
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 5.7e-52 208.8 327 40.7
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 5.7e-52 208.8 276 44.2
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 1.0e-48 198.0 164 58.5
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 8.8e-45 184.9 181 50.3
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 3.0e-37 159.8 116 69.8
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.8e-35 153.3 181 48.6
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 1.8e-34 150.6 160 49.4
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 2.4e-34 150.2 132 57.6
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 7.0e-34 148.7 330 33.3
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 2.0e-33 147.1 117 65.8
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 2.2e-27 127.1 95 64.2
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.0e-24 118.2 97 61.9
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.3e-24 117.9 180 40.6
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 2.8e-22 110.2 162 40.7
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 3.5e-09 66.6 144 38.2
TAR636G3545 Trochodendron aralioides HOM05D006393 ORTHO05D008088 3.3e-07 60.1 82 43.9
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 7.3e-07 58.9 68 47.1
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 6.2e-06 55.8 58 50.0


User provided reference genes

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