Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 9.7e-124 446.8 224 100.0
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 1.2e-97 360.1 224 80.8
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 3.6e-94 348.6 224 78.1
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 4.7e-94 348.2 219 77.6
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 1.8e-93 346.3 219 77.2
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 2.3e-93 345.9 224 76.3
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 5.2e-93 344.7 224 76.3
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 6.8e-93 344.4 224 75.0
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 8.8e-93 344.0 224 75.4
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 2.6e-92 342.4 243 72.4
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 9.8e-92 340.5 224 73.7
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 1.3e-91 340.1 224 73.7
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 2.8e-91 339.0 216 75.9
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 8.3e-91 337.4 216 75.9
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 1.1e-90 337.0 224 74.6
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 1.8e-90 336.3 227 74.0
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 1.8e-90 336.3 215 74.9
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 2.4e-90 335.9 224 73.2
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 3.1e-90 335.5 218 74.8
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 4.1e-90 335.1 222 74.8
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 5.9e-89 331.3 218 73.9
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 7.7e-89 330.9 220 75.9
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 7.7e-89 330.9 224 72.3
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 1.0e-88 330.5 212 75.9
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 1.3e-88 330.1 207 77.8
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 1.7e-88 329.7 216 74.5
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 1.1e-87 327.0 224 71.4
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 1.5e-87 326.6 213 75.1
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 1.9e-87 326.2 260 67.3
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 2.5e-87 325.9 218 71.1
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 2.5e-87 325.9 224 71.9
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 2.5e-87 325.9 224 73.7
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 2.5e-87 325.9 218 73.4
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 4.3e-87 325.1 224 72.8
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 5.6e-87 324.7 224 70.1
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 1.2e-86 323.6 216 73.1
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 1.2e-86 323.6 215 73.5
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 1.6e-86 323.2 228 72.4
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 1.6e-86 323.2 212 77.4
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 2.8e-86 322.4 213 72.8
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 2.8e-86 322.4 224 71.0
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 2.8e-86 322.4 218 71.1
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 2.8e-86 322.4 219 73.5
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 2.8e-86 322.4 217 71.9
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 3.6e-86 322.0 213 72.8
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 4.7e-86 321.6 215 76.3
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 6.1e-86 321.2 224 70.1
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 8.0e-86 320.9 217 72.8
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 8.0e-86 320.9 212 74.1
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 1.0e-85 320.5 212 74.5
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 1.4e-85 320.1 220 73.2
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 4.0e-85 318.5 217 73.3
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 5.2e-85 318.2 219 71.7
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 5.2e-85 318.2 220 72.3
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 6.8e-85 317.8 219 73.1
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 1.2e-84 317.0 223 70.0
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 2.0e-84 316.2 218 70.2
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 2.6e-84 315.8 212 73.6
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 3.4e-84 315.5 216 71.8
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 4.4e-84 315.1 216 71.8
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 4.4e-84 315.1 216 71.8
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 7.5e-84 314.3 200 77.5
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 9.8e-84 313.9 219 69.9
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 1.3e-83 313.5 216 71.3
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 3.7e-83 312.0 224 68.8
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 1.4e-82 310.1 212 71.2
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 1.8e-82 309.7 219 69.4
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 4.1e-82 308.5 224 68.8
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 7.0e-82 307.8 217 71.0
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 2.0e-81 306.2 216 69.9
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 2.0e-81 306.2 224 68.3
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 7.8e-81 304.3 241 64.7
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.0e-80 303.9 224 71.0
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 8.6e-80 300.8 218 69.3
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 2.5e-79 299.3 222 70.3
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 9.5e-79 297.4 222 67.1
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 8.9e-77 290.8 193 72.5
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 5.8e-76 288.1 214 65.9
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 5.8e-76 288.1 218 67.4
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 1.7e-75 286.6 217 68.7
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 2.2e-75 286.2 214 65.9
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 8.3e-75 284.3 262 61.5
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 1.9e-74 283.1 195 72.3
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 7.0e-74 281.2 214 67.8
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 9.2e-74 280.8 207 69.6
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 6.0e-73 278.1 246 60.2
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 3.9e-72 275.4 211 66.8
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 1.9e-71 273.1 213 65.3
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 3.3e-71 272.3 218 68.8
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 3.6e-70 268.9 217 65.4
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 1.1e-69 267.3 207 66.7
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 2.3e-69 266.2 178 73.0
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 4.0e-69 265.4 218 63.8
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 5.2e-69 265.0 268 57.1
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 4.4e-68 261.9 240 57.9
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 2.4e-66 256.1 160 78.1
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 1.8e-61 240.0 208 62.0
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 2.2e-59 233.0 221 56.6
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 3.7e-59 232.3 217 58.1
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 1.2e-57 227.3 154 70.8
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 9.6e-55 217.6 153 69.9
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 1.4e-53 213.8 229 52.0
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 2.9e-51 206.1 195 57.4
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 1.6e-49 200.3 222 50.5
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 1.3e-48 197.2 161 63.4
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 3.3e-47 192.6 143 67.1
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 1.2e-44 184.1 201 55.7
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 1.5e-39 167.2 221 43.4
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 4.3e-39 165.6 150 55.3
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 2.8e-38 162.9 109 72.5
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 4.2e-34 149.1 387 32.6
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 1.6e-33 147.1 85 81.2
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 4.9e-27 125.6 144 47.2
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 6.3e-22 108.6 149 47.0
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 5.3e-21 105.5 67 80.6
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 6.9e-21 105.1 66 81.8
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 1.0e-19 101.3 70 67.1
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 7.2e-18 95.1 51 86.3
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 1.8e-16 90.5 58 77.6
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 1.9e-15 87.0 67 59.7
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 5.7e-15 85.5 71 62.0
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 4.1e-13 79.3 191 31.4
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 1.2e-12 77.8 51 74.5
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 7.7e-12 75.1 56 69.6
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 2.9e-11 73.2 294 24.8
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 8.8e-08 61.6 57 56.1
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 2.0e-07 60.5 37 78.4


User provided reference genes

Program Settings