Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 3.5e-206 721.5 388 100.0
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 3.8e-91 339.3 352 58.2
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 3.8e-83 312.8 410 47.3
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 4.6e-81 305.8 349 53.6
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.7e-75 287.3 281 56.2
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 9.3e-74 281.6 356 50.6
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 6.3e-62 242.3 198 68.7
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 1.0e-51 208.4 393 39.4
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 5.0e-51 206.1 357 41.2
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 2.5e-50 203.8 393 38.7
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 3.6e-49 199.9 382 39.3
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 2.0e-47 194.1 393 37.4
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 3.7e-46 189.9 368 38.6
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 6.3e-46 189.1 295 44.4
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 4.1e-45 186.4 365 39.5
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 7.7e-44 182.2 392 37.5
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 1.8e-40 171.0 381 37.3
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 7.5e-39 165.6 318 39.6
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 1.7e-38 164.5 361 34.9
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.4e-37 161.4 341 37.2
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.8e-37 161.0 378 37.0
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 4.1e-37 159.8 377 36.1
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.1e-37 159.8 380 34.7
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 7.0e-37 159.1 376 36.2
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 4.5e-36 156.4 398 34.4
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 7.7e-36 155.6 366 35.5
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 1.0e-35 155.2 385 35.8
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 2.2e-35 154.1 402 32.1
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 2.2e-35 154.1 389 35.2
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.9e-35 153.7 377 33.4
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 3.8e-35 153.3 377 35.3
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 1.9e-34 151.0 389 31.9
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 4.2e-34 149.8 382 31.9
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 7.2e-34 149.1 386 32.9
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.2e-33 148.3 291 36.8
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 1.6e-33 147.9 391 32.5
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 3.6e-33 146.7 364 33.2
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.6e-33 146.7 381 33.1
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 3.0e-32 143.7 410 30.7
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.0e-32 143.7 389 33.9
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 4.0e-32 143.3 381 31.8
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 6.8e-32 142.5 308 32.5
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 8.8e-32 142.1 380 31.3
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.2e-31 141.7 389 32.9
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.5e-31 141.4 381 32.0
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 7.5e-31 139.0 381 32.5
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.7e-30 137.9 394 30.2
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 1.7e-30 137.9 373 33.5
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.8e-30 137.1 369 33.1
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 3.7e-30 136.7 376 34.6
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 8.3e-30 135.6 378 30.2
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.8e-29 134.4 390 30.0
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.1e-29 133.7 386 27.7
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 3.1e-29 133.7 386 27.7
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 3.1e-29 133.7 315 33.7
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 5.4e-29 132.9 376 30.9
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 7.0e-29 132.5 381 32.0
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 9.1e-29 132.1 392 31.1
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 9.1e-29 132.1 381 30.2
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 2.0e-28 131.0 374 33.2
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 5.9e-28 129.4 393 31.3
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.3e-27 128.3 386 28.2
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 1.3e-27 128.3 257 35.8
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 1.7e-27 127.9 416 31.7
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.3e-27 127.5 334 31.1
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 3.8e-27 126.7 395 32.7
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 5.0e-27 126.3 377 32.1
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 1.9e-26 124.4 381 32.3
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 2.5e-26 124.0 297 33.3
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 2.5e-26 124.0 368 29.9
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 3.3e-26 123.6 298 34.6
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.2e-26 123.2 387 28.7
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 9.5e-26 122.1 377 31.3
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.2e-25 121.7 387 27.6
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 4.7e-25 119.8 398 29.9
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 8.0e-25 119.0 304 33.9
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 1.4e-24 118.2 386 31.3
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.8e-24 117.9 379 32.2
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 1.8e-24 117.9 385 31.4
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.3e-24 117.5 376 29.8
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 3.0e-24 117.1 387 31.3
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 8.9e-24 115.5 382 30.6
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.2e-23 115.2 374 28.9
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 1.5e-23 114.8 369 29.0
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 2.0e-23 114.4 376 30.1
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 2.6e-23 114.0 374 28.9
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 3.4e-23 113.6 374 27.0
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 7.5e-23 112.5 365 29.9
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 9.8e-23 112.1 296 32.4
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.3e-22 111.7 297 30.6
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.1e-21 108.6 366 29.5
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.4e-21 108.2 302 28.8
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 2.4e-21 107.5 377 28.6
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 2.4e-21 107.5 380 30.3
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 7.0e-21 105.9 239 33.9
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.0e-21 105.9 313 27.5
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 1.6e-20 104.8 376 28.5
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.6e-20 104.8 354 28.2
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 4.6e-20 103.2 369 29.5
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 5.9e-20 102.8 374 28.9
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 3.9e-19 100.1 301 27.6
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.9e-19 100.1 257 31.1
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 1.1e-18 98.6 401 27.7
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 1.5e-18 98.2 398 27.6
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.5e-18 98.2 375 28.3
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 1.9e-18 97.8 374 30.2
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 4.3e-18 96.7 277 31.0
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 5.6e-18 96.3 256 27.3
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 2.8e-17 94.0 369 29.5
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 8.0e-17 92.4 376 29.5
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 8.0e-17 92.4 272 30.5
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.4e-16 91.7 223 31.8
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.4e-16 91.7 379 29.3
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 5.2e-16 89.7 380 28.4
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 5.2e-16 89.7 183 37.2
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 8.9e-16 89.0 168 33.9
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.2e-15 88.6 354 26.6
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 4.4e-15 86.7 403 27.5
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 7.5e-15 85.9 378 28.6
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.7e-14 84.7 380 30.5
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 1.7e-14 84.7 198 35.4
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 2.2e-14 84.3 381 30.2
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 3.7e-14 83.6 380 30.0
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 3.2e-13 80.5 505 22.8
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 4.1e-13 80.1 242 29.3
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 5.4e-13 79.7 356 25.8
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 9.2e-13 79.0 223 29.1
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 5.0e-11 73.2 176 31.2
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 1.6e-09 68.2 198 35.9
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 1.8e-08 64.7 212 26.4
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 3.1e-08 63.9 238 23.9
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 2.6e-07 60.8 162 30.2
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 3.4e-07 60.5 188 27.7
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 9.8e-07 58.9 225 29.3
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.7e-06 57.0 79 44.3
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 3.7e-06 57.0 400 24.8


User provided reference genes

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