Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 3.6e-203 711.4 386 100.0
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 7.7e-153 544.3 391 77.5
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 2.9e-152 542.3 385 76.9
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 8.5e-152 540.8 393 75.3
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 5.5e-151 538.1 390 75.4
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 1.0e-149 533.9 387 74.2
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 4.4e-148 528.5 388 74.2
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 3.8e-128 462.2 385 64.4
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 7.2e-127 458.0 385 63.4
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 7.2e-127 458.0 385 63.4
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 7.2e-127 458.0 388 63.7
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 7.2e-127 458.0 386 64.0
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 3.6e-126 455.7 300 75.3
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 6.1e-126 454.9 387 68.0
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.4e-125 453.8 385 62.6
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 1.4e-125 453.8 385 63.4
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 6.8e-125 451.4 388 62.6
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 8.9e-125 451.1 273 79.9
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.2e-124 450.7 386 63.0
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.0e-124 449.9 384 64.1
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 2.0e-124 449.9 384 68.5
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 5.7e-124 448.4 257 82.5
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 7.5e-124 448.0 384 62.8
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 7.5e-124 448.0 387 63.6
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.3e-123 447.2 385 63.9
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 4.9e-123 445.3 273 78.8
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.9e-123 445.3 388 61.3
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.4e-122 443.7 273 78.4
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.8e-122 443.4 386 63.0
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 5.4e-122 441.8 384 67.4
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 7.0e-122 441.4 384 63.0
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 7.0e-122 441.4 385 61.6
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 3.5e-121 439.1 388 62.1
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 4.5e-121 438.7 255 80.8
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.7e-120 436.8 385 61.8
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 2.3e-120 436.4 415 62.9
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 2.9e-120 436.0 385 61.6
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 8.6e-120 434.5 385 61.0
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.1e-119 434.1 415 62.7
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 1.5e-119 433.7 385 62.1
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 2.5e-119 433.0 389 60.7
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 3.3e-119 432.6 415 62.2
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 4.3e-119 432.2 385 61.0
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 7.3e-119 431.4 385 61.6
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.4e-117 427.2 385 59.7
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.8e-117 426.8 385 59.7
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 8.9e-117 424.5 390 60.8
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 3.4e-116 422.5 386 59.3
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 7.5e-116 421.4 385 59.2
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.3e-115 420.6 384 60.9
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.3e-115 420.6 384 60.9
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 2.4e-114 416.4 385 59.7
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 2.3e-112 409.8 385 59.5
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 3.0e-112 409.5 384 58.9
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.0e-112 409.5 387 57.6
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 3.9e-112 409.1 383 59.0
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 5.0e-112 408.7 255 75.7
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 8.6e-112 407.9 385 59.7
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.3e-111 406.0 301 67.1
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 5.6e-111 405.2 425 59.5
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 7.3e-111 404.8 386 56.2
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 7.3e-111 404.8 386 58.0
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 3.6e-110 402.5 383 58.2
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.6e-110 402.5 288 70.1
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 8.0e-110 401.4 385 62.6
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 1.2e-108 397.5 386 57.0
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 1.5e-108 397.1 482 49.4
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.5e-108 397.1 363 60.1
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 2.0e-108 396.7 385 56.1
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 2.6e-108 396.4 386 60.1
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 7.5e-108 394.8 386 56.7
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.7e-107 393.7 383 56.9
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.9e-106 390.2 385 55.1
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.9e-106 390.2 391 55.2
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 4.1e-106 389.0 383 56.4
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 4.6e-105 385.6 390 61.3
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.3e-104 383.3 387 55.3
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 3.9e-104 382.5 385 56.1
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.5e-103 380.6 384 56.0
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 5.6e-103 378.6 320 60.3
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.4e-101 374.0 256 67.6
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.2e-101 372.1 410 55.9
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.5e-100 370.5 392 52.3
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 9.9e-100 367.9 214 80.4
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.7e-99 367.1 207 82.1
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.1e-98 364.4 403 52.9
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 1.1e-95 354.4 368 54.3
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.5e-95 354.0 390 52.6
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 4.3e-95 352.4 265 66.0
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 2.1e-94 350.1 311 57.9
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 8.9e-93 344.7 385 51.7
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.2e-92 344.4 402 52.7
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 1.5e-92 344.0 254 65.7
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 5.8e-92 342.0 342 55.0
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 6.4e-91 338.6 385 49.9
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 8.4e-91 338.2 385 49.4
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.4e-91 338.2 409 54.3
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 4.1e-90 335.9 340 54.1
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 7.1e-90 335.1 302 56.3
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 3.5e-89 332.8 360 53.6
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 1.2e-86 324.3 314 53.5
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 8.1e-86 321.6 311 52.1
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 2.2e-83 313.5 309 51.5
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.1e-82 311.2 272 54.8
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 4.2e-82 309.3 311 51.1
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 6.0e-81 305.4 272 54.0
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.5e-79 300.8 273 53.8
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 3.3e-79 299.7 385 43.9
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 3.3e-79 299.7 385 43.9
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 2.1e-78 297.0 261 55.6
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 2.1e-78 297.0 385 43.6
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 2.1e-78 297.0 174 81.0
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 8.1e-78 295.0 261 55.6
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 3.1e-77 293.1 186 75.8
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 6.9e-77 292.0 263 54.4
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 4.5e-76 289.3 394 48.7
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.5e-68 264.2 168 74.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 1.3e-67 261.2 181 65.2
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 4.9e-67 259.2 263 49.0
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 7.1e-66 255.4 159 74.2
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 5.8e-60 235.7 220 51.8
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 7.6e-60 235.3 153 72.5
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 3.8e-59 233.0 315 41.0
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 6.5e-59 232.3 150 75.3
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.5e-43 179.1 119 73.1
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.5e-42 177.2 175 60.0
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.5e-42 176.0 114 71.9
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 3.9e-40 169.9 245 39.6
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 9.1e-37 158.7 100 76.0
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 1.5e-31 141.4 119 60.5
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 5.9e-28 129.4 80 73.8
MSTRG.25744 Avicennia marina HOM05D005374 ORTHO05D006534 1.2e-25 121.7 150 57.3
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.5e-20 103.2 56 75.0
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.0e-16 90.1 182 38.5
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 5.2e-16 89.7 74 62.2
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 1.2e-15 88.6 181 39.2
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 9.8e-15 85.5 76 57.9
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 2.2e-14 84.3 210 43.3
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.8e-14 83.2 48 79.2
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.0e-11 75.5 53 73.6
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 5.0e-11 73.2 377 21.8
PRCOL_00002207 Prasinoderma coloniale HOM05D005374 ORTHO05D006534 1.7e-06 58.2 257 25.3


User provided reference genes

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