Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 1.1e-63 246.9 170 100.0
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.7e-51 206.5 170 77.1
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.8e-50 203.0 171 84.2
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 5.0e-48 194.9 170 68.8
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 9.5e-47 190.7 170 75.9
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 2.3e-45 186.0 170 78.2
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 8.9e-45 184.1 163 79.1
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 1.5e-44 183.3 170 67.6
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.4e-44 182.2 168 70.8
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.2e-43 179.5 170 58.2
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.1e-42 177.2 170 68.2
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.1e-42 177.2 168 69.0
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.4e-42 176.8 165 69.1
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 4.1e-42 175.3 166 80.7
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 5.4e-42 174.9 163 84.7
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 7.0e-42 174.5 166 70.5
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 9.2e-42 174.1 166 68.1
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 1.2e-41 173.7 170 76.5
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 1.6e-41 173.3 166 65.7
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.6e-41 173.3 166 65.7
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.6e-41 173.3 166 65.7
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.3e-40 170.2 166 66.9
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 2.3e-40 169.5 171 67.3
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.3e-40 169.5 166 65.1
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 2.3e-40 169.5 165 80.6
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.9e-40 168.7 166 66.3
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 5.0e-40 168.3 166 78.3
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 8.6e-40 167.5 163 81.0
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 1.1e-39 167.2 171 74.9
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.1e-39 167.2 175 76.0
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.1e-39 167.2 175 76.0
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.5e-39 166.8 168 77.4
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 1.5e-39 166.8 168 79.2
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.9e-39 166.4 171 67.8
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.5e-39 166.0 168 78.6
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.5e-39 166.0 168 78.6
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 2.5e-39 166.0 168 78.6
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.5e-39 166.0 170 68.2
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 3.3e-39 165.6 170 78.2
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 9.5e-39 164.1 163 79.1
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.2e-38 163.7 173 76.9
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.2e-38 163.7 166 64.5
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.6e-38 163.3 166 65.7
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.8e-38 162.5 154 81.2
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 3.6e-38 162.2 163 66.9
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 3.6e-38 162.2 167 64.1
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 3.6e-38 162.2 163 77.9
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 3.6e-38 162.2 161 78.3
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 3.6e-38 162.2 166 63.9
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 4.7e-38 161.8 172 63.4
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 6.2e-38 161.4 161 67.7
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 8.1e-38 161.0 175 64.6
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 8.1e-38 161.0 166 75.3
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.1e-37 160.6 166 50.6
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.4e-37 160.2 168 64.3
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 2.3e-37 159.5 168 63.7
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 6.8e-37 157.9 158 77.8
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.9e-37 157.5 170 63.5
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 8.9e-37 157.5 168 64.3
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 2.6e-36 156.0 169 76.3
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 2.6e-36 156.0 169 76.3
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.6e-36 156.0 173 62.4
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 2.6e-36 156.0 166 65.1
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.6e-36 156.0 165 76.4
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 3.4e-36 155.6 172 74.4
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.4e-36 155.6 169 63.3
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 5.8e-36 154.8 164 78.7
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 7.5e-36 154.5 169 63.3
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 7.5e-36 154.5 165 63.6
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 2.2e-35 152.9 171 72.5
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 2.2e-35 152.9 163 65.0
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 4.9e-35 151.8 164 75.0
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 4.9e-35 151.8 159 76.7
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 6.4e-35 151.4 148 75.7
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 8.3e-35 151.0 173 71.7
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 170 62.4
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 1.1e-34 150.6 170 62.4
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.4e-34 150.2 173 73.4
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.4e-34 150.2 170 62.4
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.9e-34 149.8 173 61.3
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.9e-34 149.8 163 77.3
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.9e-34 149.8 174 71.3
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 1.9e-34 149.8 166 62.7
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 2.4e-34 149.4 162 77.2
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.4e-34 149.4 173 71.7
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.4e-34 149.4 162 63.6
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 2.4e-34 149.4 159 76.7
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 3.2e-34 149.1 157 66.9
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.2e-34 149.1 143 74.8
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 4.1e-34 148.7 171 74.3
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 7.1e-34 147.9 159 76.1
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 7.1e-34 147.9 155 75.5
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.2e-33 147.1 168 76.8
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.2e-33 147.1 159 67.3
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.6e-33 146.7 170 75.9
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 3.5e-33 145.6 169 71.6
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 4.6e-33 145.2 159 63.5
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 4.6e-33 145.2 159 71.1
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.7e-32 143.3 170 72.4
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 3.9e-32 142.1 155 61.3
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 5.1e-32 141.7 157 50.3
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.1e-32 141.7 157 50.3
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 8.6e-32 141.0 168 75.6
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.1e-31 140.6 166 63.9
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.1e-31 140.6 157 49.7
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.5e-31 139.4 165 49.1
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 5.6e-31 138.3 167 73.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 7.3e-31 137.9 167 73.1
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 7.3e-31 137.9 165 73.9
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 9.5e-31 137.5 165 60.0
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 9.5e-31 137.5 167 73.1
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 9.5e-31 137.5 167 73.1
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 9.5e-31 137.5 165 60.0
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 9.5e-31 137.5 165 73.9
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 1.2e-30 137.1 167 72.5
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 2.8e-30 136.0 153 77.1
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 2.8e-30 136.0 153 77.1
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.6e-30 135.6 167 59.9
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 6.2e-30 134.8 157 60.5
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 6.2e-30 134.8 157 60.5
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 6.2e-30 134.8 157 60.5
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 6.2e-30 134.8 168 58.3
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.4e-29 133.7 171 59.6
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.8e-29 133.3 164 70.7
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.8e-29 133.3 231 36.8
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 3.1e-29 132.5 168 71.4
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.6e-28 129.4 165 58.8
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 3.4e-28 129.0 163 47.2
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 7.6e-28 127.9 129 69.0
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.9e-27 125.9 151 59.6
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 6.4e-27 124.8 169 50.9
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.1e-26 124.0 151 58.9
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.2e-26 122.5 150 46.0
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 1.2e-25 120.6 148 75.7
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.7e-24 116.7 139 75.5
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 3.9e-24 115.5 127 63.8
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.5e-23 113.6 153 52.9
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 2.1e-22 109.8 126 63.5
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 3.6e-22 109.0 98 82.7
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.7e-19 100.1 117 64.1
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.9e-18 96.7 129 57.4
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 2.4e-18 96.3 121 61.2
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 3.5e-17 92.4 79 54.4
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 3.0e-16 89.4 101 74.3
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 1.1e-15 87.4 81 50.6
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.9e-15 86.7 152 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 2.5e-15 86.3 108 38.9
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 4.3e-15 85.5 102 69.6
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 2.4e-13 79.7 48 75.0
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.5e-12 77.0 46 71.7


User provided reference genes

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