Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11814 Avicennia marina HOM05D006422 ORTHO05D007992 4.3e-127 458.0 229 100.0
Migut.A00443 Erythranthe guttata HOM05D006422 ORTHO05D007992 1.0e-88 330.5 232 72.8
Dinv10868 Davidia involucrata HOM05D006422 ORTHO05D007992 4.1e-85 318.5 199 77.4
Dinv26550 Davidia involucrata HOM05D006422 ORTHO05D007992 4.1e-85 318.5 199 77.4
Solyc08g006160.4 Solanum lycopersicum HOM05D006422 ORTHO05D007992 5.3e-85 318.2 197 79.2
Sopen08g002130 Solanum pennellii HOM05D006422 ORTHO05D007992 5.3e-85 318.2 197 79.2
Cc04_g09430 Coffea canephora HOM05D006422 ORTHO05D007992 1.3e-83 313.5 193 79.3
PGSC0003DMG400009533 Solanum tuberosum HOM05D006422 ORTHO05D007992 1.3e-83 313.5 234 71.8
CAN.G1364.3 Capsicum annuum HOM05D006422 ORTHO05D007992 2.9e-83 312.4 190 78.9
SGA_v2.0_scaffold27G11666 Striga asiatica HOM05D006422 ORTHO05D007992 1.6e-81 306.6 230 70.0
Nitab4.5_0000025g0080 Nicotiana tabacum HOM05D006422 ORTHO05D007992 1.1e-79 300.4 213 71.8
Peaxi162Scf00045g01530 Petunia axillaris HOM05D006422 ORTHO05D007992 5.7e-79 298.1 234 67.1
COL.COLO4_18610 Corchorus olitorius HOM05D006422 ORTHO05D007992 7.4e-79 297.7 214 67.3
Manes.16G136400 Manihot esculenta HOM05D006422 ORTHO05D007992 7.4e-79 297.7 208 71.2
Ciclev10009324m.g Citrus clementina HOM05D006422 ORTHO05D007992 1.3e-78 297.0 195 75.4
TAR383G0184 Trochodendron aralioides HOM05D006422 ORTHO05D007992 1.7e-78 296.6 210 71.9
Cfa013253 Carpinus fangiana HOM05D006422 ORTHO05D007992 6.3e-78 294.7 217 69.1
GSVIVG01035544001 Vitis vinifera HOM05D006422 ORTHO05D007992 6.3e-78 294.7 206 70.4
CiPaw.07G214400 Carya illinoinensis HOM05D006422 ORTHO05D007992 1.1e-77 293.9 230 65.7
Hma1.2p1_0534F.1_g173720 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 1.1e-77 293.9 198 72.2
Actinidia03579 Actinidia chinensis HOM05D006422 ORTHO05D007992 1.4e-77 293.5 188 74.5
AUR62020627 Chenopodium quinoa HOM05D006422 ORTHO05D007992 1.4e-77 293.5 225 66.7
Prupe.1G462100 Prunus persica HOM05D006422 ORTHO05D007992 2.4e-77 292.7 196 71.9
Thecc.09G005200 Theobroma cacao HOM05D006422 ORTHO05D007992 2.4e-77 292.7 210 68.6
Duzib168G1765 Durio zibethinus HOM05D006422 ORTHO05D007992 4.1e-77 292.0 212 66.0
Ca_12880_v3 Cicer arietinum L. HOM05D006422 ORTHO05D007992 7.0e-77 291.2 228 64.5
Nitab4.5_0003259g0070 Nicotiana tabacum HOM05D006422 ORTHO05D007992 1.5e-76 290.0 203 72.4
Potri.006G276400 Populus trichocarpa HOM05D006422 ORTHO05D007992 2.0e-76 289.7 195 71.8
Nn1g01726 Nelumbo nucifera HOM05D006422 ORTHO05D007992 2.6e-76 289.3 231 65.8
Sabra06G0214100 Salix brachista HOM05D006422 ORTHO05D007992 3.5e-76 288.9 213 68.1
Psat6g032000 Pisum sativum HOM05D006422 ORTHO05D007992 7.7e-76 287.7 195 68.2
Atru.chr7.2615_Atru.chr7.2616 Acer truncatum HOM05D006422 ORTHO05D007992 1.0e-75 287.3 221 66.5
PGR042G1463 Punica granatum HOM05D006422 ORTHO05D007992 1.3e-75 287.0 225 64.4
unitig_748.g7381 Utricularia gibba HOM05D006422 ORTHO05D007992 1.3e-75 287.0 223 65.9
DCAR_003025 Daucus carota HOM05D006422 ORTHO05D007992 1.7e-75 286.6 222 66.2
MBI13_g31531_MAGBIO Magnolia biondii HOM05D006422 ORTHO05D007992 2.9e-75 285.8 179 73.7
RcHm_v2.0_Chr6g0312201 Rosa chinensis HOM05D006422 ORTHO05D007992 8.5e-75 284.3 202 68.3
Gohir.D06G108900 Gossypium hirsutum HOM05D006422 ORTHO05D007992 1.1e-74 283.9 183 71.0
PSO017G3510 Papaver somniferum HOM05D006422 ORTHO05D007992 1.1e-74 283.9 210 67.6
Eucgr.C02103 Eucalyptus grandis HOM05D006422 ORTHO05D007992 1.4e-74 283.5 197 70.6
FvH4_2g30680 Fragaria vesca HOM05D006422 ORTHO05D007992 1.9e-74 283.1 202 67.3
Gorai.010G123700 Gossypium raimondii HOM05D006422 ORTHO05D007992 1.9e-74 283.1 183 71.0
QL12p024696 Quercus lobata HOM05D006422 ORTHO05D007992 1.9e-74 283.1 217 67.7
FAN24G2382 Fragaria x ananassa HOM05D006422 ORTHO05D007992 2.5e-74 282.7 202 67.3
Medtr1g009980 Medicago truncatula HOM05D006422 ORTHO05D007992 2.5e-74 282.7 233 60.9
Aqoxy5G03915 Aquilegia oxysepala HOM05D006422 ORTHO05D007992 3.2e-74 282.3 199 70.9
ATR0626G032 Amborella trichopoda HOM05D006422 ORTHO05D007992 4.2e-74 282.0 207 66.7
Rhsim07G0170200 Rhododendron simsii HOM05D006422 ORTHO05D007992 4.2e-74 282.0 231 62.8
Gohir.A06G106700 Gossypium hirsutum HOM05D006422 ORTHO05D007992 5.5e-74 281.6 187 71.1
TPR.G11997 Trifolium pratense HOM05D006422 ORTHO05D007992 5.5e-74 281.6 194 68.6
TWI34G0909 Tripterygium wilfordii HOM05D006422 ORTHO05D007992 7.2e-74 281.2 218 64.7
HPP92_004705 Vanilla planifolia HOM05D006422 ORTHO05D007992 9.4e-74 280.8 198 67.7
CANSAT25G0758 Cannabis sativa HOM05D006422 ORTHO05D007992 1.2e-73 280.4 239 59.8
THA.LOC104811048 Tarenaya hassleriana HOM05D006422 ORTHO05D007992 1.2e-73 280.4 238 58.8
EL10Ac2g03719 Beta vulgaris HOM05D006422 ORTHO05D007992 1.6e-73 280.0 246 60.6
MD15G1109900 Malus domestica HOM05D006422 ORTHO05D007992 2.7e-73 279.3 219 64.4
PSO170G4757 Papaver somniferum HOM05D006422 ORTHO05D007992 2.7e-73 279.3 210 66.7
BcaB08g36552 Brassica carinata HOM05D006422 ORTHO05D007992 3.6e-73 278.9 239 58.2
BcaC04g19400 Brassica carinata HOM05D006422 ORTHO05D007992 3.6e-73 278.9 191 67.0
C09p56110 Brassica napus HOM05D006422 ORTHO05D007992 3.6e-73 278.9 191 67.0
BolC9t58478H Brassica oleracea HOM05D006422 ORTHO05D007992 3.6e-73 278.9 191 67.0
HanXRQChr13g0412481 Helianthus annuus HOM05D006422 ORTHO05D007992 3.6e-73 278.9 184 69.0
Lj5g0012981 Lotus japonicus HOM05D006422 ORTHO05D007992 3.6e-73 278.9 218 65.1
Lalb_Chr14g0362181 Lupinus albus HOM05D006422 ORTHO05D007992 3.6e-73 278.9 219 64.4
CDE04G2326 Ceratophyllum demersum HOM05D006422 ORTHO05D007992 4.7e-73 278.5 204 64.7
Phvul.001G058000 Phaseolus vulgaris HOM05D006422 ORTHO05D007992 6.1e-73 278.1 197 68.5
Sc09g0007930 Simmondsia chinensis HOM05D006422 ORTHO05D007992 6.1e-73 278.1 236 61.0
Lsat_1_v5_gn_5_61061 Lactuca sativa HOM05D006422 ORTHO05D007992 1.0e-72 277.3 182 71.4
A10p19790 Brassica napus HOM05D006422 ORTHO05D007992 1.4e-72 276.9 229 60.3
BraA10t44055Z Brassica rapa HOM05D006422 ORTHO05D007992 1.4e-72 276.9 229 60.3
AUR62038756 Chenopodium quinoa HOM05D006422 ORTHO05D007992 1.8e-72 276.6 187 70.6
FAN27G3442 Fragaria x ananassa HOM05D006422 ORTHO05D007992 2.3e-72 276.2 236 60.2
Sp6g24440 Schrenkiella parvula HOM05D006422 ORTHO05D007992 3.0e-72 275.8 191 66.0
Thhalv10014537m.g Eutrema salsugineum HOM05D006422 ORTHO05D007992 8.8e-72 274.2 237 58.6
A03p09710 Brassica napus HOM05D006422 ORTHO05D007992 2.0e-71 273.1 191 66.0
BraA03t10287Z Brassica rapa HOM05D006422 ORTHO05D007992 2.0e-71 273.1 191 66.0
VMungo0647G2190 Vigna mungo HOM05D006422 ORTHO05D007992 2.0e-71 273.1 230 60.9
arahy.Tifrunner.gnm1.ann1.43EIBT Arachis hypogaea HOM05D006422 ORTHO05D007992 2.6e-71 272.7 213 64.3
BolC3t13599H Brassica oleracea HOM05D006422 ORTHO05D007992 4.4e-71 271.9 191 66.0
vmacro05107 Vaccinium macrocarpon HOM05D006422 ORTHO05D007992 4.4e-71 271.9 171 72.5
C03p11290 Brassica napus HOM05D006422 ORTHO05D007992 5.7e-71 271.6 191 66.0
BcaB01g04822 Brassica carinata HOM05D006422 ORTHO05D007992 7.4e-71 271.2 190 66.3
Haze_21696 Corylus avellana HOM05D006422 ORTHO05D007992 1.7e-70 270.0 158 78.5
Oeu018400.2 Olea europaea HOM05D006422 ORTHO05D007992 2.8e-70 269.2 156 80.8
arahy.Tifrunner.gnm1.ann1.D9GJPD Arachis hypogaea HOM05D006422 ORTHO05D007992 4.8e-70 268.5 213 63.4
BcaB01g04848 Brassica carinata HOM05D006422 ORTHO05D007992 4.8e-70 268.5 234 57.3
CARHR192910 Cardamine hirsuta HOM05D006422 ORTHO05D007992 6.3e-70 268.1 191 63.9
AT5G19940 Arabidopsis thaliana HOM05D006422 ORTHO05D007992 8.2e-70 267.7 191 64.4
AL6G31470 Arabidopsis lyrata HOM05D006422 ORTHO05D007992 1.1e-69 267.3 191 63.9
Carub.0006s1831 Capsella rubella HOM05D006422 ORTHO05D007992 1.8e-69 266.5 191 63.9
Os04g0607000 Oryza sativa ssp. japonica HOM05D006422 ORTHO05D007992 2.0e-68 263.1 207 63.8
Zm00001eb071430 Zea mays HOM05D006422 ORTHO05D007992 3.5e-68 262.3 208 65.9
Aa31LG9G9500 Aethionema arabicum HOM05D006422 ORTHO05D007992 7.7e-68 261.2 214 59.8
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 9.4e-66 254.2 182 64.8
Glyma.17G201600 Glycine max HOM05D006422 ORTHO05D007992 9.7e-63 244.2 200 63.0
FAN20G1184 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.7e-62 243.4 214 57.5
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 4.8e-62 241.9 222 59.0
SEGI_33970 Sequoiadendron giganteum HOM05D006422 ORTHO05D007992 4.2e-58 228.8 185 58.9
Ah.11g043920 Amaranthus hybridus HOM05D006422 ORTHO05D007992 2.0e-55 219.9 204 58.8
Lj7A749G60 Lonicera japonica HOM05D006422 ORTHO05D007992 6.3e-54 214.9 122 81.1
FAN15G3645 Fragaria x ananassa HOM05D006422 ORTHO05D007992 5.4e-53 211.8 212 51.4
CiPaw.08G017800 Carya illinoinensis HOM05D006422 ORTHO05D007992 1.3e-51 207.2 206 57.8
AagrBONN_evm.TU.Sc2ySwM_228.4709 Anthoceros agrestis HOM05D006422 ORTHO05D007992 6.6e-51 204.9 164 54.9
SMO364G0843 Selaginella moellendorffii HOM05D006422 ORTHO05D007992 8.6e-51 204.5 164 57.9
Pp3c13_4790 Physcomitrium patens HOM05D006422 ORTHO05D007992 1.0e-48 197.6 229 42.8
Mapoly0021s0119 Marchantia polymorpha HOM05D006422 ORTHO05D007992 4.0e-48 195.7 183 48.6
CSS0034711 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 6.8e-48 194.9 142 68.3
CSS0017479 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.4e-45 187.2 121 73.6
Hma1.2p1_0534F.1_g173730 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 1.6e-44 183.7 137 67.2
MELO3C011201.2 Cucumis melo HOM05D006422 ORTHO05D007992 3.5e-44 182.6 159 59.1
Gorai.002G101300 Gossypium raimondii HOM05D006422 ORTHO05D007992 1.4e-40 170.6 112 70.5
CSS0035518 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 3.9e-35 152.5 129 60.5
Oeu014126.1 Olea europaea HOM05D006422 ORTHO05D007992 2.5e-34 149.8 95 77.9
CBR_g3792 Chara braunii HOM05D006422 ORTHO05D007992 9.2e-29 131.3 173 37.6
Cre12.g502250 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 2.2e-22 110.2 191 35.1
MCO15G093 Micromonas commoda HOM05D006422 ORTHO05D007992 8.3e-22 108.2 201 34.3
Cre07.g325736 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 3.3e-18 96.3 173 30.6
PRCOL_00004658 Prasinoderma coloniale HOM05D006422 ORTHO05D007992 2.1e-17 93.6 203 31.5
Hund19396 Selenicereus undatus HOM05D006422 ORTHO05D007992 4.7e-17 92.4 79 62.0
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 1.3e-09 67.8 217 25.8
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 2.1e-09 67.0 178 27.0
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 1.4e-08 64.3 177 24.9
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 1.4e-08 64.3 177 26.6
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 1.4e-08 64.3 185 24.3
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 1.4e-08 64.3 177 27.1
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 1.4e-08 64.3 186 25.8
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 2.4e-08 63.5 204 25.0
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 2.4e-08 63.5 180 25.6
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 2.4e-08 63.5 179 26.8
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 2.4e-08 63.5 185 25.9
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 2.4e-08 63.5 198 26.8
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 3.1e-08 63.2 179 26.8
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 4.0e-08 62.8 185 25.9
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 4.0e-08 62.8 173 25.4
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 4.0e-08 62.8 190 25.8
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 4.0e-08 62.8 193 26.4
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 5.3e-08 62.4 177 25.4
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 5.3e-08 62.4 187 25.7
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 6.9e-08 62.0 175 26.3
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 6.9e-08 62.0 179 26.3
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 9.0e-08 61.6 174 24.1
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 1.2e-07 61.2 182 26.4
Gorai.002G209300 Gossypium raimondii HOM05D003483 ORTHO05D004101 1.2e-07 61.2 247 24.3
COL.COLO4_17881 Corchorus olitorius HOM05D003483 ORTHO05D004101 1.5e-07 60.8 179 24.6
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.5e-07 60.8 185 25.4
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 1.5e-07 60.8 179 25.7
Dinv19357 Davidia involucrata HOM05D003483 ORTHO05D004101 2.0e-07 60.5 248 24.2
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.0e-07 60.5 185 24.9
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 2.6e-07 60.1 179 26.8
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 2.6e-07 60.1 235 24.7
Thecc.02G039900 Theobroma cacao HOM05D003483 ORTHO05D004101 3.4e-07 59.7 175 24.6
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 3.4e-07 59.7 178 24.7
Gohir.A01G177800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 4.4e-07 59.3 247 25.1
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 4.4e-07 59.3 236 26.3
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 5.8e-07 58.9 225 24.0
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 5.8e-07 58.9 179 25.7
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 5.8e-07 58.9 177 24.9
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 5.8e-07 58.9 179 25.7
AL5G14750 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 7.6e-07 58.5 178 21.3
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 7.6e-07 58.5 176 23.9
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 7.6e-07 58.5 185 25.4
CARHR147060 Cardamine hirsuta HOM05D003483 ORTHO05D004101 9.9e-07 58.2 178 21.9
AT3G26070 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 1.3e-06 57.8 178 20.8
Gohir.D01G168600 Gossypium hirsutum HOM05D003483 ORTHO05D004101 1.3e-06 57.8 243 23.9
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 1.3e-06 57.8 219 22.8
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 1.3e-06 57.8 180 26.1
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 1.3e-06 57.8 179 22.9
Carub.0005s0393 Capsella rubella HOM05D003483 ORTHO05D004101 1.7e-06 57.4 178 21.3
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 2.2e-06 57.0 242 26.0
Thhalv10004837m.g Eutrema salsugineum HOM05D003483 ORTHO05D004101 2.2e-06 57.0 178 21.3
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 2.2e-06 57.0 251 24.7
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 2.2e-06 57.0 181 25.4
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 2.9e-06 56.6 239 25.9
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 2.9e-06 56.6 185 25.9
A06p42270 Brassica napus HOM05D003483 ORTHO05D004101 3.8e-06 56.2 178 20.2
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 3.8e-06 56.2 183 25.1
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 3.8e-06 56.2 231 24.2
Sp2g15270 Schrenkiella parvula HOM05D003483 ORTHO05D004101 3.8e-06 56.2 179 20.7
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 4.9e-06 55.8 178 23.0
BcaC06g31094 Brassica carinata HOM05D003483 ORTHO05D004101 8.4e-06 55.1 178 20.2
Cre11.g478850 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 8.4e-06 55.1 200 25.5


User provided reference genes

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