Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11808 Avicennia marina HOM05D004099 ORTHO05D004777 1.4e-88 329.7 188 100.0
Migut.A00433 Erythranthe guttata HOM05D004099 ORTHO05D004777 3.5e-18 95.9 87 59.8
SGA_v2.0_scaffold193G40664 Striga asiatica HOM05D004099 ORTHO05D004777 9.3e-11 71.2 106 38.7
Actinidia06428 Actinidia chinensis HOM05D004099 ORTHO05D004777 1.3e-09 67.4 125 43.2
Carub.0004s0391 Capsella rubella HOM05D004099 ORTHO05D004777 2.3e-09 66.6 62 58.1
CARHR117460 Cardamine hirsuta HOM05D004099 ORTHO05D004777 2.3e-09 66.6 65 55.4
Manes.16G135100 Manihot esculenta HOM05D004099 ORTHO05D004777 2.3e-09 66.6 71 50.7
Sp4g03550 Schrenkiella parvula HOM05D004099 ORTHO05D004777 5.1e-09 65.5 79 46.8
HPP92_015829 Vanilla planifolia HOM05D002359 ORTHO05D002394 5.1e-09 65.5 85 44.7
Actinidia22257 Actinidia chinensis HOM05D004099 ORTHO05D004777 6.7e-09 65.1 128 41.4
EL10Ac2g02414 Beta vulgaris HOM05D004099 ORTHO05D004777 6.7e-09 65.1 69 53.6
Cpa.g.sc23.25 Carica papaya HOM05D004099 ORTHO05D004777 6.7e-09 65.1 61 55.7
Carub.0006s2274 Capsella rubella HOM05D004099 ORTHO05D004777 8.7e-09 64.7 72 45.8
Carub.0007s0905 Capsella rubella HOM05D004099 ORTHO05D004777 8.7e-09 64.7 56 58.9
CsaV3_2G031340 Cucumis sativus L. HOM05D004099 ORTHO05D004777 8.7e-09 64.7 85 45.9
Thhalv10000300m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 1.1e-08 64.3 79 48.1
THA.LOC104803325 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 1.1e-08 64.3 69 50.7
A03p60800 Brassica napus HOM05D004099 ORTHO05D004777 1.5e-08 63.9 63 54.0
BraA03t15116Z Brassica rapa HOM05D004099 ORTHO05D004777 1.5e-08 63.9 63 54.0
QL12p025350 Quercus lobata HOM05D004099 ORTHO05D004777 1.5e-08 63.9 73 46.6
Aa31LG7G12320 Aethionema arabicum HOM05D004099 ORTHO05D004777 1.9e-08 63.5 56 57.1
BcaB06g27983 Brassica carinata HOM05D004099 ORTHO05D004777 1.9e-08 63.5 56 58.9
BcaC02g08443 Brassica carinata HOM05D004099 ORTHO05D004777 1.9e-08 63.5 56 58.9
A04p18910 Brassica napus HOM05D004099 ORTHO05D004777 1.9e-08 63.5 56 58.9
C04p54150 Brassica napus HOM05D004099 ORTHO05D004777 1.9e-08 63.5 56 58.9
BolC4t26967H Brassica oleracea HOM05D004099 ORTHO05D004777 1.9e-08 63.5 56 58.9
BraA04t17493Z Brassica rapa HOM05D004099 ORTHO05D004777 1.9e-08 63.5 56 58.9
arahy.Tifrunner.gnm1.ann1.EP35YN Arachis hypogaea HOM05D004099 ORTHO05D004777 3.3e-08 62.8 90 41.1
MELO3C003623.2 Cucumis melo HOM05D004099 ORTHO05D004777 3.3e-08 62.8 102 43.1
Gohir.D05G066200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 3.3e-08 62.8 62 54.8
Gorai.009G067000 Gossypium raimondii HOM05D004099 ORTHO05D004777 3.3e-08 62.8 62 54.8
PGR044G2369 Punica granatum HOM05D004099 ORTHO05D004777 3.3e-08 62.8 57 56.1
AT2G24550 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 4.3e-08 62.4 65 55.4
BcaB06g27984 Brassica carinata HOM05D004099 ORTHO05D004777 4.3e-08 62.4 57 59.6
CARHR239380 Cardamine hirsuta HOM05D004099 ORTHO05D004777 4.3e-08 62.4 54 61.1
ClCG08G012630 Citrullus lanatus HOM05D004099 ORTHO05D004777 4.3e-08 62.4 90 44.4
MELO3C011183.2 Cucumis melo HOM05D004099 ORTHO05D004777 4.3e-08 62.4 85 44.7
CsaV3_3G047130 Cucumis sativus L. HOM05D004099 ORTHO05D004777 4.3e-08 62.4 94 44.7
Thhalv10026165m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 4.3e-08 62.4 70 52.9
AL4G15100 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 5.6e-08 62.0 70 52.9
BcaC07g40920 Brassica carinata HOM05D004099 ORTHO05D004777 5.6e-08 62.0 56 55.4
Carub.0005s0964 Capsella rubella HOM05D002359 ORTHO05D002394 5.6e-08 62.0 101 39.6
ClCG05G026470 Citrullus lanatus HOM05D004099 ORTHO05D004777 5.6e-08 62.0 61 54.1
Duzib168G0203 Durio zibethinus HOM05D004099 ORTHO05D004777 5.6e-08 62.0 113 39.8
Sp7g29350 Schrenkiella parvula HOM05D004099 ORTHO05D004777 5.6e-08 62.0 63 57.1
Thecc.09G008200 Theobroma cacao HOM05D004099 ORTHO05D004777 5.6e-08 62.0 61 52.5
Aa31LG2G18840 Aethionema arabicum HOM05D004099 ORTHO05D004777 7.4e-08 61.6 57 56.1
A09p56190 Brassica napus HOM05D004099 ORTHO05D004777 7.4e-08 61.6 56 55.4
BraA09t41015Z Brassica rapa HOM05D004099 ORTHO05D004777 7.4e-08 61.6 56 55.4
AL7G20550 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 9.6e-08 61.2 56 58.9
Gohir.A06G105200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 9.6e-08 61.2 106 39.6
Gohir.D06G107300 Gossypium hirsutum HOM05D004099 ORTHO05D004777 9.6e-08 61.2 106 39.6
Gorai.010G122000 Gossypium raimondii HOM05D004099 ORTHO05D004777 9.6e-08 61.2 106 39.6
BcaNung04134 Brassica carinata HOM05D004099 ORTHO05D004777 1.3e-07 60.8 63 57.1
Sabra18G0015300 Salix brachista HOM05D004099 ORTHO05D004777 1.3e-07 60.8 66 45.5
HPP92_010298 Vanilla planifolia HOM05D002359 ORTHO05D002394 1.3e-07 60.8 86 41.9
arahy.Tifrunner.gnm1.ann1.DC2GX7 Arachis hypogaea HOM05D004099 ORTHO05D004777 1.6e-07 60.5 90 40.0
CSS0016285 Camellia sinensis var. sinensis HOM05D004099 ORTHO05D004777 1.6e-07 60.5 61 49.2
Gohir.A05G063600 Gossypium hirsutum HOM05D004099 ORTHO05D004777 2.1e-07 60.1 105 41.0
Sed0009150 Sechium edule HOM05D004099 ORTHO05D004777 2.1e-07 60.1 69 47.8
TWI34G1482 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 2.1e-07 60.1 64 46.9
AT5G24890 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 2.8e-07 59.7 72 47.2
BcaB03g12702 Brassica carinata HOM05D004099 ORTHO05D004777 2.8e-07 59.7 56 57.1
BcaNung04135 Brassica carinata HOM05D004099 ORTHO05D004777 2.8e-07 59.7 63 55.6
C07p58690 Brassica napus HOM05D004099 ORTHO05D004777 2.8e-07 59.7 63 55.6
BolC7t46319H Brassica oleracea HOM05D004099 ORTHO05D004777 2.8e-07 59.7 63 55.6
Duzib150G0962 Durio zibethinus HOM05D004099 ORTHO05D004777 2.8e-07 59.7 64 51.6
Sabra06G0211400 Salix brachista HOM05D004099 ORTHO05D004777 2.8e-07 59.7 66 45.5
TWI63G1697 Tripterygium wilfordii HOM05D002359 ORTHO05D002394 2.8e-07 59.7 65 44.6
VMungo1309G2218 Vigna mungo HOM05D004099 ORTHO05D004777 2.8e-07 59.7 88 42.0
Aa31LG4G13540 Aethionema arabicum HOM05D002359 ORTHO05D002394 3.7e-07 59.3 94 40.4
CANSAT25G3311 Cannabis sativa HOM05D004099 ORTHO05D004777 3.7e-07 59.3 117 37.6
Sopen08g022630 Solanum pennellii HOM05D004099 ORTHO05D004777 3.7e-07 59.3 89 44.9
Thecc.09G076900 Theobroma cacao HOM05D002359 ORTHO05D002394 3.7e-07 59.3 111 36.9
BcaB02g10771 Brassica carinata HOM05D002359 ORTHO05D002394 4.8e-07 58.9 109 37.6
CARHR188560 Cardamine hirsuta HOM05D004099 ORTHO05D004777 4.8e-07 58.9 73 46.6
Ca_15654_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 4.8e-07 58.9 88 43.2
Ca_15662_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 4.8e-07 58.9 88 43.2
MD08G1127700 Malus domestica HOM05D004099 ORTHO05D004777 4.8e-07 58.9 64 46.9
THA.LOC104819932 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 4.8e-07 58.9 82 43.9
Atru.chr7.2654 Acer truncatum HOM05D004099 ORTHO05D004777 6.2e-07 58.5 94 37.2
BcaB07g31174 Brassica carinata HOM05D002359 ORTHO05D002394 6.2e-07 58.5 107 34.6
BcaC02g10043 Brassica carinata HOM05D002359 ORTHO05D002394 6.2e-07 58.5 88 38.6
BcaC04g23565 Brassica carinata HOM05D004099 ORTHO05D004777 6.2e-07 58.5 68 48.5
A09p17970 Brassica napus HOM05D002359 ORTHO05D002394 6.2e-07 58.5 94 39.4
C04p33580 Brassica napus HOM05D002359 ORTHO05D002394 6.2e-07 58.5 88 38.6
C09p07050 Brassica napus HOM05D004099 ORTHO05D004777 6.2e-07 58.5 68 48.5
BolC4t24926H Brassica oleracea HOM05D002359 ORTHO05D002394 6.2e-07 58.5 88 38.6
BolC9t53621H Brassica oleracea HOM05D004099 ORTHO05D004777 6.2e-07 58.5 68 48.5
Manes.03G053700 Manihot esculenta HOM05D002359 ORTHO05D002394 6.2e-07 58.5 113 39.8
Potri.018G008200 Populus trichocarpa HOM05D004099 ORTHO05D004777 6.2e-07 58.5 62 46.8
CiPaw.07G211800 Carya illinoinensis HOM05D004099 ORTHO05D004777 8.1e-07 58.2 61 50.8
COL.COLO4_18098 Corchorus olitorius HOM05D002359 ORTHO05D002394 8.1e-07 58.2 114 36.8
Thhalv10004845m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 8.1e-07 58.2 132 31.8
HPP92_028260 Vanilla planifolia HOM05D002359 ORTHO05D002394 8.1e-07 58.2 91 36.3
GSVIVG01012477001 Vitis vinifera HOM05D004099 ORTHO05D004777 8.1e-07 58.2 57 54.4
AL6G36570 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 1.1e-06 57.8 57 50.9
AT4G31510 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 1.1e-06 57.8 56 55.4
MSTRG.11633 Avicennia marina HOM05D002359 ORTHO05D002394 1.1e-06 57.8 125 36.8
BcaC04g22180 Brassica carinata HOM05D002359 ORTHO05D002394 1.1e-06 57.8 88 39.8
C09p22390 Brassica napus HOM05D002359 ORTHO05D002394 1.1e-06 57.8 88 39.8
BraA09t37431Z Brassica rapa HOM05D002359 ORTHO05D002394 1.1e-06 57.8 88 38.6
CiPaw.04G143200 Carya illinoinensis HOM05D002359 ORTHO05D002394 1.1e-06 57.8 130 30.0
FAN15G2474 Fragaria x ananassa HOM05D004099 ORTHO05D004777 1.1e-06 57.8 112 31.2
Glyma.06G077200 Glycine max HOM05D004099 ORTHO05D004777 1.1e-06 57.8 65 44.6
Phvul.001G059700 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 1.1e-06 57.8 89 41.6
Sed0004011 Sechium edule HOM05D004099 ORTHO05D004777 1.1e-06 57.8 86 45.3
HPP92_010785 Vanilla planifolia HOM05D004099 ORTHO05D004777 1.1e-06 57.8 61 49.2
Aa31LG11G4090 Aethionema arabicum HOM05D004099 ORTHO05D004777 1.4e-06 57.4 58 50.0
AT3G43850 Arabidopsis thaliana HOM05D002359 ORTHO05D002394 1.4e-06 57.4 87 37.9
BolC1t04003H Brassica oleracea HOM05D002359 ORTHO05D002394 1.4e-06 57.4 116 32.8
Glyma.04G076000 Glycine max HOM05D004099 ORTHO05D004777 1.4e-06 57.4 65 46.2
Medtr1g045430 Medicago truncatula HOM05D004099 ORTHO05D004777 1.4e-06 57.4 88 43.2
Solyc08g068970.3 Solanum lycopersicum HOM05D004099 ORTHO05D004777 1.4e-06 57.4 89 43.8
THA.LOC104803870 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 1.4e-06 57.4 60 51.7
TPR.G34393 Trifolium pratense HOM05D004099 ORTHO05D004777 1.4e-06 57.4 88 43.2
A01p31650 Brassica napus HOM05D002359 ORTHO05D002394 1.8e-06 57.0 86 37.2
BraA01t03294Z Brassica rapa HOM05D002359 ORTHO05D002394 1.8e-06 57.0 86 37.2
Duzib187G0542 Durio zibethinus HOM05D002359 ORTHO05D002394 1.8e-06 57.0 138 31.9
Migut.A00067 Erythranthe guttata HOM05D002359 ORTHO05D002394 1.8e-06 57.0 127 37.0
Sc06g0000180 Simmondsia chinensis HOM05D004099 ORTHO05D004777 1.8e-06 57.0 88 47.7
Duzib168G0434 Durio zibethinus HOM05D002359 ORTHO05D002394 2.4e-06 56.6 120 35.8
Thhalv10029499m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 2.4e-06 56.6 105 38.1
MD15G1107100 Malus domestica HOM05D004099 ORTHO05D004777 2.4e-06 56.6 58 50.0
HPP92_017131 Vanilla planifolia HOM05D004099 ORTHO05D004777 2.4e-06 56.6 106 35.8
Cfa017864 Carpinus fangiana HOM05D002359 ORTHO05D002394 3.1e-06 56.2 143 32.9
Lj1g0009765 Lotus japonicus HOM05D004099 ORTHO05D004777 3.1e-06 56.2 86 40.7
Manes.16G095300 Manihot esculenta HOM05D002359 ORTHO05D002394 3.1e-06 56.2 99 37.4
Sp5g17360 Schrenkiella parvula HOM05D002359 ORTHO05D002394 3.1e-06 56.2 77 40.3
AL5G21890 Arabidopsis lyrata HOM05D002359 ORTHO05D002394 4.0e-06 55.8 108 35.2
AL6G32900 Arabidopsis lyrata HOM05D002359 ORTHO05D002394 4.0e-06 55.8 117 35.0
C07p42870 Brassica napus HOM05D004099 ORTHO05D004777 4.0e-06 55.8 62 48.4
BolC7t44814H Brassica oleracea HOM05D004099 ORTHO05D004777 4.0e-06 55.8 62 48.4
Cpa.g.sc126.12 Carica papaya HOM05D002359 ORTHO05D002394 4.0e-06 55.8 98 37.8
Thhalv10014420m.g Eutrema salsugineum HOM05D002359 ORTHO05D002394 4.0e-06 55.8 105 37.1
Peaxi162Scf00288g00911 Petunia axillaris HOM05D004099 ORTHO05D004777 4.0e-06 55.8 87 39.1
Psat0s1810g0040 Pisum sativum HOM05D004099 ORTHO05D004777 4.0e-06 55.8 88 42.0
Sp6g23250 Schrenkiella parvula HOM05D002359 ORTHO05D002394 4.0e-06 55.8 134 34.3
vmacro06341 Vaccinium macrocarpon HOM05D002359 ORTHO05D002394 4.0e-06 55.8 118 36.4
BcaC09g49292 Brassica carinata HOM05D002359 ORTHO05D002394 5.3e-06 55.5 88 35.2
A06p35670 Brassica napus HOM05D004099 ORTHO05D004777 5.3e-06 55.5 62 48.4
C01p40500 Brassica napus HOM05D002359 ORTHO05D002394 5.3e-06 55.5 88 35.2
BraA06t26492Z Brassica rapa HOM05D004099 ORTHO05D004777 5.3e-06 55.5 62 48.4
Lalb_Chr23g0269151 Lupinus albus HOM05D004099 ORTHO05D004777 5.3e-06 55.5 89 41.6
MBI19_g44267_MAGBIO Magnolia biondii HOM05D002359 ORTHO05D002394 5.3e-06 55.5 103 34.0
Sp2g22560 Schrenkiella parvula HOM05D004099 ORTHO05D004777 5.3e-06 55.5 130 33.8
Sed0023350 Sechium edule HOM05D002359 ORTHO05D002394 5.3e-06 55.5 136 32.4
THA.LOC104814974 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 5.3e-06 55.5 125 36.8
TPR.G13173 Trifolium pratense HOM05D002359 ORTHO05D002394 5.3e-06 55.5 121 31.4
BraA02t08969Z Brassica rapa HOM05D004099 ORTHO05D004777 6.9e-06 55.1 55 54.5
BraA09t36281Z Brassica rapa HOM05D004099 ORTHO05D004777 6.9e-06 55.1 68 47.1
CARHR191590 Cardamine hirsuta HOM05D002359 ORTHO05D002394 6.9e-06 55.1 82 40.2
CiPaw.08G020400 Carya illinoinensis HOM05D004099 ORTHO05D004777 6.9e-06 55.1 124 33.9
Lj1g0009724 Lotus japonicus HOM05D002359 ORTHO05D002394 6.9e-06 55.1 115 35.7
Lalb_Chr11g0064161 Lupinus albus HOM05D004099 ORTHO05D004777 6.9e-06 55.1 88 39.8
Lalb_Chr22g0361221 Lupinus albus HOM05D004099 ORTHO05D004777 6.9e-06 55.1 61 45.9
RcHm_v2.0_Chr6g0305061 Rosa chinensis HOM05D004099 ORTHO05D004777 6.9e-06 55.1 123 33.3
TWI34G1691 Tripterygium wilfordii HOM05D002359 ORTHO05D002394 6.9e-06 55.1 121 32.2
C03p87870 Brassica napus HOM05D004099 ORTHO05D004777 9.0e-06 54.7 99 41.4
BolC3t21102H Brassica oleracea HOM05D004099 ORTHO05D004777 9.0e-06 54.7 99 41.4
BolC9t55157H Brassica oleracea HOM05D002359 ORTHO05D002394 9.0e-06 54.7 88 38.6
BraA08t33820Z Brassica rapa HOM05D004099 ORTHO05D004777 9.0e-06 54.7 99 41.4
Duzib150G0040 Durio zibethinus HOM05D002359 ORTHO05D002394 9.0e-06 54.7 137 34.3


User provided reference genes

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