Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11741 Avicennia marina HOM05D002602 ORTHO05D002661 2.5e-39 165.6 130 100.0
Rhsim02G0187000 Rhododendron simsii HOM05D002602 ORTHO05D002661 2.4e-18 95.9 118 72.9
TAR636G3129 Trochodendron aralioides HOM05D002602 ORTHO05D002661 1.2e-17 93.6 130 49.2
MSTRG.1648 Avicennia marina HOM05D002602 ORTHO05D002661 1.7e-16 89.7 130 71.5
TAR626G0862 Trochodendron aralioides HOM05D002602 ORTHO05D002661 3.0e-16 89.0 128 69.5
Dinv30216 Davidia involucrata HOM05D002602 ORTHO05D002661 6.6e-16 87.8 132 71.2
Lj7A711G44 Lonicera japonica HOM05D002602 ORTHO05D002661 1.9e-15 86.3 130 65.4
vmacro05448 Vaccinium macrocarpon HOM05D002602 ORTHO05D002661 1.9e-15 86.3 132 68.9
Dinv35879 Davidia involucrata HOM05D002602 ORTHO05D002661 3.3e-15 85.5 131 70.2
CSS0042317 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 6.9e-13 77.8 77 72.7
Actinidia13291 Actinidia chinensis HOM05D002602 ORTHO05D002661 1.2e-12 77.0 132 54.5
Hma1.2p1_0175F.1_g077310 Hydrangea macrophylla HOM05D002602 ORTHO05D002661 1.2e-12 77.0 91 72.5
Actinidia14641 Actinidia chinensis HOM05D002250 ORTHO05D002393 1.5e-12 76.6 132 62.1
SGA_v2.0_scaffold169G38633 Striga asiatica HOM05D002602 ORTHO05D002661 3.4e-12 75.5 131 67.9
SalBow8G1639 Salvia bowleyana HOM05D002602 ORTHO05D002661 5.8e-12 74.7 130 68.5
MSTRG.14002 Avicennia marina HOM05D002602 ORTHO05D002661 7.6e-12 74.3 130 66.9
Eucgr.C02860 Eucalyptus grandis HOM05D002602 ORTHO05D002661 8.4e-11 70.9 130 66.9
Eucgr.L02512 Eucalyptus grandis HOM05D002602 ORTHO05D002661 1.1e-10 70.5 130 66.9
PGSC0003DMG400014501 Solanum tuberosum HOM05D002602 ORTHO05D002661 1.9e-10 69.7 130 62.3
Actinidia15713 Actinidia chinensis HOM05D002602 ORTHO05D002661 2.4e-10 69.3 132 51.5
TAR624G0315 Trochodendron aralioides HOM05D002602 ORTHO05D002661 2.4e-10 69.3 127 59.8
PGR044G2133 Punica granatum HOM05D002602 ORTHO05D002661 4.2e-10 68.6 133 57.1
CSS0048428 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 5.4e-10 68.2 128 62.5
Sabra18G0035600 Salix brachista HOM05D002602 ORTHO05D002661 7.1e-10 67.8 130 64.6
Lalb_Chr13g0302291 Lupinus albus HOM05D002602 ORTHO05D002661 1.6e-09 66.6 126 65.9
TAR383G0480 Trochodendron aralioides HOM05D002602 ORTHO05D002661 1.6e-09 66.6 128 64.1
Phvul.009G098300 Phaseolus vulgaris HOM05D002602 ORTHO05D002661 2.7e-09 65.9 129 62.0
Glyma.04G072600 Glycine max HOM05D002602 ORTHO05D002661 3.5e-09 65.5 128 62.5
RcHm_v2.0_Chr6g0312721 Rosa chinensis HOM05D002602 ORTHO05D002661 6.0e-09 64.7 124 64.5
Solyc08g150138.1 Solanum lycopersicum HOM05D002602 ORTHO05D002661 7.8e-09 64.3 130 61.5
Gohir.A05G010900 Gossypium hirsutum HOM05D002602 ORTHO05D002661 1.0e-08 63.9 130 66.9
arahy.Tifrunner.gnm1.ann1.2N625L Arachis hypogaea HOM05D002602 ORTHO05D002661 1.3e-08 63.5 126 65.9
CiPaw.08G015900 Carya illinoinensis HOM05D002602 ORTHO05D002661 2.3e-08 62.8 128 62.5
Duzib150G1692 Durio zibethinus HOM05D002602 ORTHO05D002661 2.3e-08 62.8 128 65.6
Sopen08g021810 Solanum pennellii HOM05D002602 ORTHO05D002661 2.3e-08 62.8 130 60.8
GSVIVG01035728001 Vitis vinifera HOM05D002602 ORTHO05D002661 2.3e-08 62.8 128 60.9
FAN20G3150 Fragaria x ananassa HOM05D002602 ORTHO05D002661 3.0e-08 62.4 128 64.1
Prupe.1G466300 Prunus persica HOM05D002602 ORTHO05D002661 3.9e-08 62.0 128 63.3
CAN.G21.19 Capsicum annuum HOM05D002602 ORTHO05D002661 5.1e-08 61.6 132 44.7
Glyma.06G073800 Glycine max HOM05D002602 ORTHO05D002661 5.1e-08 61.6 128 63.3
Gorai.009G011900 Gossypium raimondii HOM05D002602 ORTHO05D002661 6.6e-08 61.2 130 66.2
Sopen08g021800 Solanum pennellii HOM05D002602 ORTHO05D002661 1.1e-07 60.5 130 59.2
Dinv36599 Davidia involucrata HOM05D002602 ORTHO05D002661 1.5e-07 60.1 128 64.1
Hund03001 Selenicereus undatus HOM05D002602 ORTHO05D002661 1.5e-07 60.1 133 63.9
FvH4_2g30190 Fragaria vesca HOM05D002602 ORTHO05D002661 1.9e-07 59.7 128 64.1
Aqoxy7G01832 Aquilegia oxysepala HOM05D002602 ORTHO05D002661 3.3e-07 58.9 131 57.3
Gohir.D05G011600 Gossypium hirsutum HOM05D002602 ORTHO05D002661 5.6e-07 58.2 130 65.4
Oeu014657.1 Olea europaea HOM05D002602 ORTHO05D002661 5.6e-07 58.2 130 61.5
unitig_0.g2813 Utricularia gibba HOM05D002602 ORTHO05D002661 5.6e-07 58.2 130 40.0
Gohir.A08G237200 Gossypium hirsutum HOM05D002602 ORTHO05D002661 7.3e-07 57.8 130 63.1
Duzib168G1527 Durio zibethinus HOM05D002602 ORTHO05D002661 9.6e-07 57.4 127 63.8
CSS0041585 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 1.3e-06 57.0 128 60.9
Migut.E01502 Erythranthe guttata HOM05D002602 ORTHO05D002661 1.3e-06 57.0 131 61.8
Peaxi162Scf00105g01219 Petunia axillaris HOM05D002602 ORTHO05D002661 1.3e-06 57.0 130 62.3
Rhsim03G0245200 Rhododendron simsii HOM05D002602 ORTHO05D002661 1.3e-06 57.0 127 61.4
Ciclev10008908m.g Citrus clementina HOM05D002602 ORTHO05D002661 1.6e-06 56.6 130 58.5
Gohir.D13G209200 Gossypium hirsutum HOM05D002602 ORTHO05D002661 1.6e-06 56.6 131 65.6
Gorai.013G238300 Gossypium raimondii HOM05D002602 ORTHO05D002661 1.6e-06 56.6 131 65.6
Manes.16G068400 Manihot esculenta HOM05D002602 ORTHO05D002661 1.6e-06 56.6 91 68.1
vmacro06191 Vaccinium macrocarpon HOM05D002602 ORTHO05D002661 1.6e-06 56.6 128 60.2
arahy.Tifrunner.gnm1.ann1.8T4WXA Arachis hypogaea HOM05D002602 ORTHO05D002661 2.1e-06 56.2 119 54.6
Gohir.D07G003800 Gossypium hirsutum HOM05D002602 ORTHO05D002661 2.1e-06 56.2 132 62.1
SalBow4G3032 Salvia bowleyana HOM05D002602 ORTHO05D002661 2.1e-06 56.2 131 63.4
VMungo1309G1769 Vigna mungo HOM05D002602 ORTHO05D002661 2.1e-06 56.2 127 59.8
FAN27G2877 Fragaria x ananassa HOM05D002602 ORTHO05D002661 3.6e-06 55.5 128 60.9
Lalb_Chr12g0197611 Lupinus albus HOM05D002602 ORTHO05D002661 3.6e-06 55.5 127 60.6
Nitab4.5_0000125g0110 Nicotiana tabacum HOM05D002602 ORTHO05D002661 3.6e-06 55.5 130 60.8
QL12p031218 Quercus lobata HOM05D002602 ORTHO05D002661 3.6e-06 55.5 127 59.8
Thecc.09G115400 Theobroma cacao HOM05D002602 ORTHO05D002661 3.6e-06 55.5 125 60.8
EL10Ac2g02533 Beta vulgaris HOM05D002602 ORTHO05D002661 4.8e-06 55.1 135 57.8
Cpa.g.sc23.149 Carica papaya HOM05D002602 ORTHO05D002661 4.8e-06 55.1 131 61.1
arahy.Tifrunner.gnm1.ann1.293L9L Arachis hypogaea HOM05D002602 ORTHO05D002661 6.2e-06 54.7 120 61.7
CiPaw.07G217400 Carya illinoinensis HOM05D002602 ORTHO05D002661 6.2e-06 54.7 130 60.0
Thecc.09G115500 Theobroma cacao HOM05D002602 ORTHO05D002661 6.2e-06 54.7 130 56.9
Actinidia13423 Actinidia chinensis HOM05D002250 ORTHO05D002393 8.1e-06 54.3 129 62.0
Sopen05g015460 Solanum pennellii HOM05D002602 ORTHO05D002661 8.1e-06 54.3 129 43.4


User provided reference genes

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