Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11698 Avicennia marina HOM05D006532 ORTHO05D008570 3.6e-172 608.2 323 100.0
Migut.A00204 Erythranthe guttata HOM05D006532 ORTHO05D008570 4.2e-136 488.4 321 82.2
SGA_v2.0_scaffold75G25009 Striga asiatica HOM05D006532 ORTHO05D008570 9.3e-136 487.3 323 80.8
Oeu038806.1 Olea europaea HOM05D006532 ORTHO05D008570 3.2e-128 462.2 322 76.4
SalBow4G2374 Salvia bowleyana HOM05D006532 ORTHO05D008570 7.2e-128 461.1 324 77.5
Solyc08g066640.3 Solanum lycopersicum HOM05D006532 ORTHO05D008570 3.9e-118 428.7 321 71.7
Cc08_g09550 Coffea canephora HOM05D006532 ORTHO05D008570 1.5e-117 426.8 323 70.6
Sopen08g020510 Solanum pennellii HOM05D006532 ORTHO05D008570 2.0e-117 426.4 322 71.1
CSS0019039 Camellia sinensis var. sinensis HOM05D006532 ORTHO05D008570 9.7e-117 424.1 325 71.4
PGSC0003DMG402002229 Solanum tuberosum HOM05D006532 ORTHO05D008570 3.7e-116 422.2 322 70.5
Actinidia13336 Actinidia chinensis HOM05D006532 ORTHO05D008570 1.1e-115 420.6 324 71.3
Nitab4.5_0003794g0050 Nicotiana tabacum HOM05D006532 ORTHO05D008570 7.7e-114 414.5 320 70.9
TAR383G0022 Trochodendron aralioides HOM05D006532 ORTHO05D008570 8.5e-113 411.0 321 69.5
Prupe.1G448300 Prunus persica HOM05D006532 ORTHO05D008570 1.4e-112 410.2 324 70.7
Thecc.09G045200 Theobroma cacao HOM05D006532 ORTHO05D008570 4.7e-111 405.2 327 69.1
Lsat_1_v5_gn_6_23160 Lactuca sativa HOM05D006532 ORTHO05D008570 1.4e-110 403.7 326 70.2
GSVIVG01035625001 Vitis vinifera HOM05D006532 ORTHO05D008570 1.4e-110 403.7 324 68.5
unitig_748.g7511 Utricularia gibba HOM05D006532 ORTHO05D008570 2.3e-110 402.9 325 69.2
MD08G1113700 Malus domestica HOM05D006532 ORTHO05D008570 3.0e-110 402.5 323 68.4
ECA233G4786 Erigeron canadensis HOM05D006532 ORTHO05D008570 8.8e-110 401.0 322 68.9
Cpa.g.c24654.2 Carica papaya HOM05D006532 ORTHO05D008570 4.4e-109 398.7 329 68.7
RcHm_v2.0_Chr6g0306211 Rosa chinensis HOM05D006532 ORTHO05D008570 4.4e-109 398.7 327 68.2
CAN.G400.2 Capsicum annuum HOM05D006532 ORTHO05D008570 5.7e-109 398.3 322 67.1
Ciclev10008913m.g Citrus clementina HOM05D006532 ORTHO05D008570 1.3e-108 397.1 324 68.5
Dinv27901 Davidia involucrata HOM05D006532 ORTHO05D008570 1.3e-108 397.1 314 70.4
Peaxi162Scf00227g00717 Petunia axillaris HOM05D006532 ORTHO05D008570 2.2e-108 396.4 321 67.9
Gohir.D05G048600 Gossypium hirsutum HOM05D006532 ORTHO05D008570 2.8e-108 396.0 329 68.7
QL12p041387 Quercus lobata HOM05D006532 ORTHO05D008570 2.8e-108 396.0 327 69.7
MBI04_g45213_MAGBIO Magnolia biondii HOM05D006532 ORTHO05D008570 3.7e-108 395.6 324 68.5
FvH4_2g35600 Fragaria vesca HOM05D006532 ORTHO05D008570 6.3e-108 394.8 325 68.3
Cfa013365 Carpinus fangiana HOM05D006532 ORTHO05D008570 1.4e-107 393.7 330 66.7
FAN27G1267 Fragaria x ananassa HOM05D006532 ORTHO05D008570 3.1e-107 392.5 325 68.0
PGR031G1209 Punica granatum HOM05D006532 ORTHO05D008570 3.1e-107 392.5 326 66.9
CiPaw.07G204300 Carya illinoinensis HOM05D006532 ORTHO05D008570 7.0e-107 391.3 326 66.9
FAN15G2034 Fragaria x ananassa HOM05D006532 ORTHO05D008570 7.0e-107 391.3 325 67.7
Sabra06G0186500 Salix brachista HOM05D006532 ORTHO05D008570 9.1e-107 391.0 319 66.8
Atru.chr7.2089 Acer truncatum HOM05D006532 ORTHO05D008570 1.6e-106 390.2 325 66.2
Gorai.009G049900 Gossypium raimondii HOM05D006532 ORTHO05D008570 4.5e-106 388.7 327 68.5
HanXRQChr02g0050581 Helianthus annuus HOM05D006532 ORTHO05D008570 4.5e-106 388.7 322 66.8
Rhsim02G0178300 Rhododendron simsii HOM05D006532 ORTHO05D008570 4.5e-106 388.7 324 64.2
Eucgr.C00591 Eucalyptus grandis HOM05D006532 ORTHO05D008570 2.2e-105 386.3 326 66.6
vmacro11058 Vaccinium macrocarpon HOM05D006532 ORTHO05D008570 2.2e-105 386.3 346 62.7
Hma1.2p1_1138F.1_g260800 Hydrangea macrophylla HOM05D006532 ORTHO05D008570 2.9e-105 386.0 249 79.9
COL.COLO4_20970 Corchorus olitorius HOM05D006532 ORTHO05D008570 5.0e-105 385.2 313 68.4
EL10Ac2g04018 Beta vulgaris HOM05D006532 ORTHO05D008570 8.5e-105 384.4 328 65.5
Potri.006G238400 Populus trichocarpa HOM05D006532 ORTHO05D008570 8.5e-105 384.4 335 64.2
Carub.0004s0565 Capsella rubella HOM05D006532 ORTHO05D008570 1.6e-103 380.2 334 64.7
Aqoxy7G03906 Aquilegia oxysepala HOM05D006532 ORTHO05D008570 2.1e-103 379.8 327 65.4
AT2G25830 Arabidopsis thaliana HOM05D006532 ORTHO05D008570 2.1e-103 379.8 337 64.4
THA.LOC104803760 Tarenaya hassleriana HOM05D006532 ORTHO05D008570 6.1e-103 378.3 333 65.5
TWI63G1016 Tripterygium wilfordii HOM05D006532 ORTHO05D008570 6.1e-103 378.3 327 63.9
MELO3C011141.2 Cucumis melo HOM05D006532 ORTHO05D008570 1.0e-102 377.5 321 66.4
CsaV3_2G030860 Cucumis sativus L. HOM05D006532 ORTHO05D008570 1.4e-102 377.1 322 66.8
Manes.16G075600 Manihot esculenta HOM05D006532 ORTHO05D008570 1.4e-102 377.1 321 67.6
AL4G17550 Arabidopsis lyrata HOM05D006532 ORTHO05D008570 2.3e-102 376.3 331 64.4
Sed0025155 Sechium edule HOM05D006532 ORTHO05D008570 4.0e-102 375.6 286 72.0
Lj8A581T27 Lonicera japonica HOM05D006532 ORTHO05D008570 6.7e-102 374.8 236 81.4
arahy.Tifrunner.gnm1.ann1.WYW67Z Arachis hypogaea HOM05D006532 ORTHO05D008570 1.2e-101 374.0 304 69.4
Sp4g05660 Schrenkiella parvula HOM05D006532 ORTHO05D008570 1.5e-101 373.6 333 64.0
Sc23g0005260 Simmondsia chinensis HOM05D006532 ORTHO05D008570 2.0e-101 373.2 325 63.1
BolC4t27098H Brassica oleracea HOM05D006532 ORTHO05D008570 2.6e-101 372.9 331 65.3
CDE02G1820 Ceratophyllum demersum HOM05D006532 ORTHO05D008570 5.7e-101 371.7 300 68.7
AUR62009283 Chenopodium quinoa HOM05D006532 ORTHO05D008570 7.5e-101 371.3 329 65.0
Thhalv10002038m.g Eutrema salsugineum HOM05D006532 ORTHO05D008570 9.7e-101 370.9 333 64.0
C04p55710 Brassica napus HOM05D006532 ORTHO05D008570 1.3e-100 370.5 330 65.2
A04p20040 Brassica napus HOM05D006532 ORTHO05D008570 2.2e-100 369.8 331 65.0
TWI63G0186 Tripterygium wilfordii HOM05D006532 ORTHO05D008570 2.8e-100 369.4 330 63.6
CANSAT25G2817 Cannabis sativa HOM05D006532 ORTHO05D008570 1.1e-99 367.5 250 77.2
Lalb_Chr08g0243051 Lupinus albus HOM05D006532 ORTHO05D008570 1.1e-99 367.5 269 72.1
Ca_15592_v3 Cicer arietinum L. HOM05D006532 ORTHO05D008570 2.4e-99 366.3 277 70.4
Glyma.06G085900 Glycine max HOM05D006532 ORTHO05D008570 3.1e-99 365.9 287 68.3
Lj1g0025870 Lotus japonicus HOM05D006532 ORTHO05D008570 1.6e-98 363.6 259 73.7
DCAR_004469 Daucus carota HOM05D006532 ORTHO05D008570 2.0e-98 363.2 322 64.9
Phvul.009G109800 Phaseolus vulgaris HOM05D006532 ORTHO05D008570 3.5e-98 362.5 288 68.8
Nn8g39129 Nelumbo nucifera HOM05D006532 ORTHO05D008570 4.5e-98 362.1 236 78.4
VMungo1309G2674 Vigna mungo HOM05D006532 ORTHO05D008570 4.5e-98 362.1 259 73.0
ClCG08G012230 Citrullus lanatus HOM05D006532 ORTHO05D008570 2.2e-97 359.8 372 58.9
Hund19514 Selenicereus undatus HOM05D006532 ORTHO05D008570 3.8e-97 359.0 351 59.8
Aa31LG5G9920 Aethionema arabicum HOM05D006532 ORTHO05D008570 6.5e-97 358.2 354 60.7
Zm00001eb293770 Zea mays HOM05D006532 ORTHO05D008570 2.5e-96 356.3 320 59.7
ATR0705G133 Amborella trichopoda HOM05D006532 ORTHO05D008570 3.2e-96 355.9 300 65.7
Medtr3g109620 Medicago truncatula HOM05D006532 ORTHO05D008570 2.7e-95 352.8 330 60.9
arahy.Tifrunner.gnm1.ann1.W7W61Q Arachis hypogaea HOM05D006532 ORTHO05D008570 3.6e-95 352.4 331 62.5
TPR.G15104 Trifolium pratense HOM05D006532 ORTHO05D008570 1.4e-94 350.5 322 61.5
Os05g0519800 Oryza sativa ssp. japonica HOM05D006532 ORTHO05D008570 1.2e-93 347.4 315 60.0
CARHR115400 Cardamine hirsuta HOM05D006532 ORTHO05D008570 2.0e-93 346.7 333 60.7
Ah.10g035030 Amaranthus hybridus HOM05D006532 ORTHO05D008570 3.4e-93 345.9 311 60.1
PSO210G1609 Papaver somniferum HOM05D006532 ORTHO05D008570 1.9e-88 330.1 290 63.1
FAN20G1106 Fragaria x ananassa HOM05D006532 ORTHO05D008570 4.2e-88 328.9 250 68.8
Nitab4.5_0001894g0020 Nicotiana tabacum HOM05D006532 ORTHO05D008570 7.2e-88 328.2 221 75.6
HPP92_022975 Vanilla planifolia HOM05D006532 ORTHO05D008570 1.6e-87 327.0 328 56.4
Hund03396 Selenicereus undatus HOM05D006532 ORTHO05D008570 9.2e-83 311.2 234 69.7
Duzib168G2121 Durio zibethinus HOM05D006532 ORTHO05D008570 3.8e-81 305.8 256 68.4
AUR62039700 Chenopodium quinoa HOM05D006532 ORTHO05D008570 1.8e-78 297.0 328 55.5
SEGI_00611 Sequoiadendron giganteum HOM05D006532 ORTHO05D008570 3.7e-76 289.3 216 63.4
Hma1.2p1_1753F.1_g300870 Hydrangea macrophylla HOM05D006532 ORTHO05D008570 1.8e-75 287.0 220 72.3
Mapoly0061s0140 Marchantia polymorpha HOM05D006532 ORTHO05D008570 8.6e-73 278.1 267 53.2
Glyma.04G084200 Glycine max HOM05D006532 ORTHO05D008570 1.1e-70 271.2 258 59.7
Eucgr.C00548 Eucalyptus grandis HOM05D006532 ORTHO05D008570 3.1e-70 269.6 222 67.6
Pp3c1_5570 Physcomitrium patens HOM05D006532 ORTHO05D008570 6.8e-70 268.5 266 51.9
AagrBONN_evm.TU.Sc2ySwM_117.144 Anthoceros agrestis HOM05D006532 ORTHO05D008570 3.2e-67 259.6 249 53.0
Psat0s1928g0160 Pisum sativum HOM05D006532 ORTHO05D008570 1.7e-65 253.8 218 63.8
Haze_21888 Corylus avellana HOM05D006532 ORTHO05D008570 9.5e-64 248.1 265 56.2
SMO145G0084 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 2.2e-60 236.9 268 47.0
SMO134G0241 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 2.9e-60 236.5 251 48.2
SMO139G0131 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 1.4e-59 234.2 253 49.0
CBR_g34330 Chara braunii HOM05D006532 ORTHO05D008570 5.4e-59 232.3 251 51.0
SMO367G0375 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 7.8e-58 228.4 248 50.0
MCO01G189 Micromonas commoda HOM05D006532 ORTHO05D008570 3.8e-52 209.5 256 43.4
Cre02.g097550 Chlamydomonas reinhardtii HOM05D006532 ORTHO05D008570 1.8e-46 190.7 249 43.8
SGA_v2.0_scaffold88G27190 Striga asiatica HOM05D006532 ORTHO05D008570 1.2e-45 188.0 122 76.2
Gohir.A05G046832 Gossypium hirsutum HOM05D006532 ORTHO05D008570 2.0e-45 187.2 129 76.0
Gohir.A05G046766 Gossypium hirsutum HOM05D006532 ORTHO05D008570 2.1e-39 167.2 165 63.6
PRCOL_00005453 Prasinoderma coloniale HOM05D006532 ORTHO05D008570 8.1e-39 165.2 245 36.7
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 1.8e-33 147.5 317 39.1
Ca_28981_v3 Cicer arietinum L. HOM05D006532 ORTHO05D008570 3.3e-24 116.7 243 28.8
Ca_28852_v3 Cicer arietinum L. HOM05D006532 ORTHO05D148468 1.4e-19 101.3 234 30.8
PGSC0003DMG401002229 Solanum tuberosum HOM05D006532 ORTHO05D008570 7.4e-08 62.4 84 54.8
Hund03397 Selenicereus undatus HOM05D006532 ORTHO05D381031 2.8e-07 60.5 32 93.8


User provided reference genes

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