Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 1.3e-72 276.2 133 100.0
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 3.9e-72 274.6 132 100.0
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.8e-54 215.3 133 73.7
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 3.1e-53 211.8 128 76.6
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 7.2e-50 200.7 126 73.0
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 7.7e-44 180.6 119 68.9
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.7e-43 179.5 120 65.8
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.8e-43 178.3 120 65.8
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.2e-42 175.3 119 65.5
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 3.2e-42 175.3 119 66.4
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 3.2e-42 175.3 119 67.2
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 3.2e-42 175.3 119 67.2
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 5.5e-42 174.5 121 59.5
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 5.5e-42 174.5 119 65.5
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 9.4e-42 173.7 119 65.5
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 2.7e-41 172.2 120 65.0
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 6.1e-41 171.0 119 63.0
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.8e-40 169.5 119 63.9
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 1.8e-40 169.5 117 67.5
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.8e-40 169.5 121 62.8
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 3.0e-40 168.7 119 63.9
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 8.8e-40 167.2 119 63.0
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.5e-39 166.4 119 64.7
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 4.4e-39 164.9 120 61.7
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 5.7e-39 164.5 119 60.5
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 7.4e-39 164.1 119 59.7
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 9.7e-39 163.7 120 65.0
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 9.7e-39 163.7 125 63.2
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 1.3e-38 163.3 120 64.2
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 1.3e-38 163.3 120 60.8
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 2.2e-38 162.5 119 60.5
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 2.8e-38 162.2 123 59.3
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 3.7e-38 161.8 120 62.5
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 4.8e-38 161.4 119 62.2
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 8.2e-38 160.6 121 61.2
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.1e-37 160.2 122 57.4
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.4e-37 159.8 119 60.5
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 1.8e-37 159.5 121 62.0
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 5.3e-37 157.9 123 57.7
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 9.1e-37 157.1 124 58.1
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 1.2e-36 156.8 149 52.3
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 2.0e-36 156.0 120 60.8
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 2.6e-36 155.6 153 50.3
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 4.5e-36 154.8 120 61.7
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 5.9e-36 154.5 119 59.7
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 7.7e-36 154.1 125 60.0
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 7.7e-36 154.1 119 60.5
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.0e-35 153.7 119 62.2
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 1.3e-35 153.3 119 57.1
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.3e-35 153.3 119 57.1
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.3e-35 153.3 119 57.1
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.3e-35 153.3 121 60.3
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 2.2e-35 152.5 120 61.7
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.2e-35 152.5 119 56.3
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.9e-35 152.1 119 56.3
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 3.8e-35 151.8 119 60.5
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 5.0e-35 151.4 125 60.0
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 6.5e-35 151.0 112 61.6
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 6.5e-35 151.0 119 56.3
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 6.5e-35 151.0 119 56.3
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 1.9e-34 149.4 117 61.5
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.5e-34 149.1 119 55.5
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 3.2e-34 148.7 124 55.6
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 5.5e-34 147.9 117 59.8
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 5.5e-34 147.9 122 55.7
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 7.2e-34 147.5 117 59.8
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 7.2e-34 147.5 122 57.4
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 9.4e-34 147.1 122 58.2
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 9.4e-34 147.1 122 57.4
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 9.4e-34 147.1 122 54.9
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 1.2e-33 146.7 121 57.9
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 1.2e-33 146.7 125 58.4
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 2.1e-33 146.0 119 53.8
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 3.6e-33 145.2 117 58.1
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 3.6e-33 145.2 119 58.0
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 3.6e-33 145.2 121 55.4
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 4.7e-33 144.8 119 56.3
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 1.8e-32 142.9 119 59.7
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.8e-32 142.9 122 54.9
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 2.3e-32 142.5 120 57.5
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 3.0e-32 142.1 119 58.0
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 5.2e-32 141.4 122 54.1
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 8.8e-32 140.6 119 57.1
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 8.8e-32 140.6 119 57.1
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 8.8e-32 140.6 120 55.0
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 1.5e-31 139.8 119 56.3
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 2.6e-31 139.0 119 56.3
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 4.4e-31 138.3 119 54.6
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 4.4e-31 138.3 117 58.1
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 4.4e-31 138.3 123 56.9
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 7.5e-31 137.5 117 58.1
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 9.7e-31 137.1 117 57.3
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 1.3e-30 136.7 119 56.3
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.7e-30 136.3 119 49.6
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 8.3e-30 134.0 121 50.4
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.8e-29 132.9 117 57.3
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 1.8e-29 132.9 117 57.3
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 1.8e-29 132.9 117 57.3
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 1.8e-29 132.9 118 55.1
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 5.3e-29 131.3 120 47.5
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 2.0e-28 129.4 121 48.8
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 2.0e-28 129.4 121 48.8
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 3.5e-28 128.6 119 51.3
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 3.8e-27 125.2 119 52.1
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.4e-24 116.7 120 46.7
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.3e-24 115.9 120 45.8
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 2.3e-24 115.9 120 45.8
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.2e-23 113.6 119 48.7
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 4.4e-23 111.7 130 42.3
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 1.4e-21 106.7 91 57.1
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 5.4e-21 104.8 117 45.3
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 9.1e-21 104.0 79 62.0
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.5e-20 102.1 122 39.3
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.3e-19 99.4 134 38.8
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 2.3e-19 99.4 120 44.2
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 6.6e-19 97.8 81 54.3
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 3.3e-18 95.5 81 58.0
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 9.5e-18 94.0 126 34.9
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 4.0e-16 88.6 81 55.6
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 5.2e-16 88.2 57 64.9
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 5.2e-16 88.2 57 64.9
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 6.8e-16 87.8 124 37.1
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 6.8e-16 87.8 124 37.1
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 7.5e-15 84.3 82 45.1
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 6.3e-14 81.3 70 54.3
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 5.4e-13 78.2 71 47.9
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 7.8e-12 74.3 144 32.6
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 3.9e-11 72.0 47 59.6
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 5.6e-10 68.2 39 74.4
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 7.3e-10 67.8 143 29.4
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 1.6e-09 66.6 39 69.2
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 1.6e-09 66.6 39 69.2
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 1.6e-09 66.6 39 69.2
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 3.6e-09 65.5 40 72.5
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 3.1e-08 62.4 39 66.7
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 3.1e-08 62.4 141 29.8
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 5.2e-08 61.6 38 68.4


User provided reference genes

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