Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 2.7e-166 588.6 296 100.0
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 7.8e-89 331.3 364 54.9
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 1.5e-87 327.0 301 61.1
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 2.5e-87 326.2 301 61.1
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 2.7e-65 253.1 312 48.1
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 5.1e-64 248.8 301 48.5
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 2.5e-63 246.5 313 47.9
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 9.6e-63 244.6 303 48.8
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 1.3e-62 244.2 310 47.7
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 6.3e-62 241.9 310 46.8
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 1.4e-61 240.7 301 46.5
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 2.4e-61 240.0 310 46.8
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 4.1e-61 239.2 304 47.4
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 4.1e-61 239.2 308 47.1
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 4.1e-61 239.2 311 46.0
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 9.0e-61 238.0 323 45.2
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.0e-60 236.9 303 46.9
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.0e-60 236.9 303 46.9
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.0e-59 234.6 301 45.5
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 1.0e-59 234.6 301 45.8
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.3e-59 234.2 304 46.1
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 1.7e-59 233.8 306 46.7
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 2.2e-59 233.4 302 46.4
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.2e-59 233.4 316 46.2
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 5.0e-59 232.3 328 45.7
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.9e-58 230.3 306 46.1
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.1e-57 226.9 294 46.6
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 6.1e-57 225.3 315 44.4
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 1.0e-56 224.6 309 45.0
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.3e-56 224.2 306 45.1
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 2.3e-56 223.4 310 44.5
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 5.1e-56 222.2 310 46.8
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 4.3e-55 219.2 301 45.8
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 9.7e-55 218.0 313 43.8
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 1.3e-54 217.6 297 43.8
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.8e-54 216.5 309 41.1
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 3.7e-54 216.1 312 44.2
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 6.3e-54 215.3 304 43.8
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 6.3e-54 215.3 306 40.8
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.4e-53 214.2 308 43.2
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 5.3e-53 212.2 310 44.8
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 6.9e-53 211.8 297 44.1
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.0e-52 210.3 301 44.2
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 3.4e-52 209.5 272 47.8
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 4.5e-52 209.1 310 40.3
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.7e-52 208.4 314 43.6
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 7.7e-52 208.4 300 43.7
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.3e-51 207.6 298 42.6
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 2.2e-51 206.8 303 42.2
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 3.8e-51 206.1 290 42.8
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 3.8e-51 206.1 306 42.5
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 6.5e-51 205.3 319 42.0
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.5e-51 205.3 319 42.0
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 6.5e-51 205.3 333 39.3
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 6.5e-51 205.3 304 40.5
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 8.5e-51 204.9 298 41.6
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 1.9e-50 203.8 297 41.1
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 2.5e-50 203.4 303 41.9
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 3.2e-50 203.0 326 40.2
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 4.2e-50 202.6 309 41.1
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 7.2e-50 201.8 304 40.8
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 9.4e-50 201.4 300 43.3
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 1.2e-49 201.1 301 39.5
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 1.2e-49 201.1 300 41.7
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 2.1e-49 200.3 304 40.1
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 3.6e-49 199.5 300 43.0
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 6.1e-49 198.7 303 40.6
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.4e-48 197.6 299 40.5
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 1.8e-48 197.2 313 40.3
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 3.0e-48 196.4 305 41.6
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 3.0e-48 196.4 301 39.2
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.9e-48 196.1 323 41.8
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 5.1e-48 195.7 296 40.5
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 8.8e-48 194.9 316 39.6
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 8.8e-48 194.9 302 39.7
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 3.3e-47 193.0 204 54.9
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 4.4e-47 192.6 296 41.2
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 5.7e-47 192.2 373 38.1
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 5.7e-47 192.2 273 43.6
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 5.7e-47 192.2 302 39.4
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 7.4e-47 191.8 337 38.9
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.3e-46 191.0 302 39.1
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.2e-46 190.3 325 39.7
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 2.8e-46 189.9 336 36.9
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 6.3e-46 188.7 298 39.3
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 8.2e-46 188.3 305 41.3
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 8.2e-46 188.3 311 38.6
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.4e-45 187.6 314 41.1
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 6.9e-45 185.3 308 37.7
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 9.1e-45 184.9 350 37.1
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.2e-44 184.5 310 41.6
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 7.7e-44 181.8 330 40.6
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.2e-42 176.4 286 42.0
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.2e-41 174.5 313 37.7
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 2.7e-41 173.3 296 38.2
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 2.7e-41 173.3 296 38.2
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 3.6e-41 172.9 298 39.6
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 7.9e-41 171.8 313 37.4
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 3.0e-40 169.9 298 38.6
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 3.9e-40 169.5 287 38.7
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 6.7e-40 168.7 297 38.4
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 2.6e-39 166.8 307 38.1
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 1.3e-38 164.5 303 40.3
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 4.8e-38 162.5 296 38.9
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 6.3e-38 162.2 403 33.7
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 9.1e-37 158.3 304 35.9
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 3.5e-36 156.4 320 35.6
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 5.9e-36 155.6 299 37.8
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.7e-35 154.1 229 41.0
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 1.5e-34 151.0 306 36.6
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 1.6e-33 147.5 321 33.6
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 6.1e-33 145.6 226 42.0
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.6e-28 131.0 226 39.8
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 5.9e-28 129.0 304 31.9
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 1.7e-27 127.5 213 40.8
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 5.0e-27 125.9 215 37.7
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 3.2e-26 123.2 260 37.7
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 7.2e-26 122.1 96 62.5
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.6e-25 120.9 302 32.5
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 3.6e-25 119.8 221 38.5
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 5.9e-20 102.4 293 28.0
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 1.3e-19 101.3 121 42.1
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 3.8e-19 99.8 234 32.5
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 5.0e-19 99.4 217 30.4
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 1.5e-18 97.8 260 28.5
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.9e-18 97.4 348 26.1
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 3.2e-18 96.7 70 68.6
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 1.8e-16 90.9 87 49.4
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 3.4e-15 86.7 246 28.5
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.4e-15 86.7 212 34.0
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 4.4e-15 86.3 116 44.0
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-13 81.6 67 61.2
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 5.4e-13 79.3 107 41.1
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 1.6e-12 77.8 324 25.9
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.0e-11 75.1 337 24.9
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 8.6e-11 72.0 55 65.5
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 8.6e-11 72.0 147 33.3
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 1.1e-10 71.6 101 39.6
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.6e-09 67.8 264 29.2
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 4.0e-08 63.2 137 33.6
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 8.9e-08 62.0 330 27.3
HanXRQChr02g0059211 Helianthus annuus HOM05D001447 ORTHO05D005923 7.5e-07 58.9 70 48.6
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.7e-06 57.8 95 30.5
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 2.9e-06 57.0 68 38.2


User provided reference genes

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