Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 4.9e-128 461.1 222 100.0
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 1.4e-119 433.0 222 94.1
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 3.8e-80 302.0 220 65.0
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 1.5e-79 300.1 218 65.6
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 2.1e-78 296.2 214 66.8
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 3.6e-78 295.4 193 71.5
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.1e-74 283.9 218 61.0
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.1e-74 283.9 212 61.3
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 4.1e-74 282.0 193 65.3
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 5.0e-72 275.0 207 60.4
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.5e-71 272.7 211 59.7
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.1e-70 269.6 211 59.7
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 2.1e-70 269.6 206 58.3
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 1.0e-69 267.3 208 61.1
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 4.0e-69 265.4 215 60.5
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 5.2e-69 265.0 208 61.1
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 2.0e-68 263.1 212 61.3
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 9.8e-68 260.8 206 57.8
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 9.8e-68 260.8 206 57.3
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.8e-66 256.5 209 57.9
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 9.1e-66 254.2 208 56.2
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.6e-65 253.4 218 56.4
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.6e-65 253.4 218 56.4
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.0e-65 253.1 213 56.8
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.0e-65 253.1 213 56.8
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 7.7e-65 251.1 215 59.1
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.3e-64 250.4 218 55.0
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.7e-64 250.0 205 56.6
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.7e-64 250.0 205 56.6
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 2.2e-64 249.6 216 56.9
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 3.8e-64 248.8 213 56.8
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.8e-64 248.8 208 58.2
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 5.0e-64 248.4 192 61.5
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 6.5e-64 248.1 222 53.2
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 6.5e-64 248.1 221 55.7
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 8.5e-64 247.7 206 56.3
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.1e-63 247.3 223 55.6
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 3.2e-63 245.7 196 56.1
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 3.2e-63 245.7 190 59.5
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 4.2e-63 245.4 190 59.5
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 4.2e-63 245.4 217 53.5
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 5.5e-63 245.0 217 52.1
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 5.5e-63 245.0 221 57.0
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 9.5e-63 244.2 218 52.3
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 9.5e-63 244.2 218 54.6
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.2e-62 243.8 208 57.2
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.6e-62 243.4 195 57.4
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 2.1e-62 243.0 207 56.0
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.1e-62 243.0 207 57.5
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 2.7e-62 242.7 191 59.2
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 2.7e-62 242.7 219 53.4
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 4.7e-62 241.9 213 54.9
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 6.1e-62 241.5 207 56.0
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 6.1e-62 241.5 190 59.5
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 6.1e-62 241.5 208 56.7
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 8.0e-62 241.1 205 57.6
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 8.0e-62 241.1 203 58.6
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 8.0e-62 241.1 210 56.2
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 8.0e-62 241.1 190 57.9
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 8.0e-62 241.1 212 54.7
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.4e-61 240.4 195 58.5
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.3e-61 239.6 221 52.9
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 2.3e-61 239.6 211 56.4
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 3.0e-61 239.2 206 55.3
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 4.0e-61 238.8 210 54.8
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 5.2e-61 238.4 215 53.0
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 8.8e-61 237.7 214 51.4
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 2.0e-60 236.5 205 55.6
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 2.6e-60 236.1 217 54.4
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.6e-60 236.1 192 55.2
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 1.3e-59 233.8 218 50.9
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.3e-59 233.8 211 52.1
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.3e-59 233.8 195 56.4
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 1.7e-59 233.4 196 55.1
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 2.2e-59 233.0 190 55.3
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 2.8e-59 232.6 207 52.7
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.8e-59 232.6 208 55.3
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 3.7e-59 232.3 218 51.8
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.9e-59 231.9 207 53.1
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 1.1e-58 230.7 192 57.3
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 1.1e-58 230.7 205 51.7
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 2.4e-58 229.6 205 52.7
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 2.4e-58 229.6 208 53.4
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 4.1e-58 228.8 219 50.7
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 5.4e-58 228.4 206 53.4
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 5.4e-58 228.4 206 53.4
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 5.4e-58 228.4 206 52.9
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 5.4e-58 228.4 211 50.2
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-57 227.3 206 52.9
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.6e-57 226.9 209 51.7
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.0e-57 226.5 190 54.7
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 3.5e-57 225.7 192 54.7
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 3.5e-57 225.7 206 53.4
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 7.7e-57 224.6 209 54.5
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.3e-56 223.8 194 53.6
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.3e-56 223.8 190 54.7
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.3e-56 223.8 196 56.1
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.3e-56 223.0 190 55.3
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 2.9e-56 222.6 206 51.9
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 2.9e-56 222.6 227 49.3
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 3.8e-56 222.2 213 51.6
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.1e-55 220.7 223 49.3
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.9e-55 219.9 211 50.2
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.5e-55 219.5 196 55.1
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 9.5e-55 217.6 168 58.9
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.2e-54 217.2 220 50.0
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 1.2e-54 217.2 205 51.7
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 2.8e-54 216.1 209 52.6
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 6.1e-54 214.9 210 48.6
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.1e-54 214.9 222 49.5
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 1.0e-53 214.2 193 52.3
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.4e-53 213.8 207 51.2
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 2.3e-53 213.0 211 49.8
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 2.3e-53 213.0 211 51.2
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 3.0e-53 212.6 218 49.5
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 6.8e-53 211.5 207 49.8
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 6.8e-53 211.5 212 47.2
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 8.9e-53 211.1 208 51.4
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.2e-52 210.7 196 51.5
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 4.4e-52 208.8 207 49.8
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 7.5e-52 208.0 203 50.2
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 9.8e-52 207.6 204 49.5
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.3e-51 207.2 209 50.2
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-51 207.2 212 46.7
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-51 207.2 212 46.7
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.9e-51 206.1 209 49.3
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 3.7e-51 205.7 203 49.8
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 4.9e-51 205.3 209 48.3
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 6.4e-51 204.9 188 54.3
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.1e-50 204.1 203 49.3
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 3.2e-50 202.6 209 48.3
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 4.1e-50 202.2 209 47.8
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 9.2e-50 201.1 202 51.0
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.6e-49 200.3 240 44.2
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 2.7e-49 199.5 210 48.1
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 4.6e-49 198.7 230 43.5
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 4.6e-49 198.7 231 43.7
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.9e-47 193.4 214 44.9
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 7.5e-44 181.4 212 41.5
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 6.4e-43 178.3 127 66.9
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 5.4e-42 175.3 157 52.9
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 1.3e-40 170.6 124 67.7
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.3e-40 169.9 196 48.5
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 3.0e-40 169.5 179 47.5
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 2.1e-38 163.3 131 58.8
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.3e-37 159.8 130 56.2
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 3.1e-37 159.5 99 72.7
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 3.2e-34 149.4 166 47.0
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 4.1e-34 149.1 139 54.0
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.1e-33 146.7 196 41.8
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 2.5e-31 139.8 207 36.7
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 6.2e-30 135.2 217 36.4
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 5.2e-29 132.1 122 57.4
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 2.6e-28 129.8 156 44.2
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 5.8e-28 128.6 110 54.5
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.3e-24 117.5 96 56.2
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 2.3e-24 116.7 95 54.7
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 3.0e-24 116.3 179 36.3
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 6.6e-24 115.2 103 53.4
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.3e-23 112.5 158 44.3
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 6.9e-21 105.1 121 44.6
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 6.9e-21 105.1 197 31.0
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 8.9e-21 104.8 110 46.4
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.6e-20 103.2 84 54.8
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 4.4e-20 102.4 133 39.8
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.3e-19 100.9 104 49.0
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 4.9e-19 99.0 171 33.3
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 2.4e-18 96.7 95 48.4
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 9.3e-18 94.7 101 46.5
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 9.3e-18 94.7 83 53.0
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.9e-15 87.0 85 47.1
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 7.3e-15 85.1 92 45.7
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-13 81.3 75 49.3
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 2.4e-13 80.1 114 40.4
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.2e-12 77.8 63 54.0
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 2.6e-12 76.6 58 56.9
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.1e-06 57.0 63 41.3


User provided reference genes

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