Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11527 Avicennia marina HOM05D007187 ORTHO05D009219 7.6e-195 683.7 363 100.0
Migut.O00232 Erythranthe guttata HOM05D007187 ORTHO05D009219 5.2e-143 511.5 357 77.9
SalBow5G2942 Salvia bowleyana HOM05D007187 ORTHO05D009219 6.2e-120 434.9 304 77.3
SGA_v2.0_scaffold90G27781 Striga asiatica HOM05D007187 ORTHO05D009219 1.2e-112 410.6 365 66.0
TAR629G1287 Trochodendron aralioides HOM05D007187 ORTHO05D009219 3.4e-110 402.5 339 66.7
GSVIVG01000394001 Vitis vinifera HOM05D007187 ORTHO05D009219 2.4e-108 396.4 296 72.6
Hma1.2p1_0471F.1_g159290 Hydrangea macrophylla HOM05D007187 ORTHO05D009219 7.1e-108 394.8 285 71.9
Ciclev10020853m.g Citrus clementina HOM05D007187 ORTHO05D009219 1.6e-107 393.7 328 66.8
Atru.chr9.1590 Acer truncatum HOM05D007187 ORTHO05D009219 7.8e-107 391.3 351 64.7
MD06G1234700 Malus domestica HOM05D007187 ORTHO05D009219 1.1e-105 387.5 286 71.0
RcHm_v2.0_Chr7g0177701 Rosa chinensis HOM05D007187 ORTHO05D009219 2.5e-105 386.3 280 72.9
Cfa020663 Carpinus fangiana HOM05D007187 ORTHO05D009219 5.6e-105 385.2 284 74.6
PGR083G1346 Punica granatum HOM05D007187 ORTHO05D009219 7.3e-105 384.8 301 70.1
QL10p033296 Quercus lobata HOM05D007187 ORTHO05D009219 2.8e-104 382.9 329 66.3
QL93p0156_0017 Quercus lobata HOM05D007187 ORTHO05D009219 2.8e-104 382.9 329 66.3
Actinidia34651 Actinidia chinensis HOM05D007187 ORTHO05D009219 2.4e-103 379.8 350 61.7
Cc04_g09730 Coffea canephora HOM05D007187 ORTHO05D009219 4.0e-103 379.0 303 67.0
Nn4g24583 Nelumbo nucifera HOM05D007187 ORTHO05D009219 9.0e-103 377.9 327 64.5
Nitab4.5_0000936g0080 Nicotiana tabacum HOM05D007187 ORTHO05D009219 1.5e-102 377.1 344 61.9
Thecc.03G067300 Theobroma cacao HOM05D007187 ORTHO05D009219 1.5e-102 377.1 317 64.4
CAN.G637.26 Capsicum annuum HOM05D007187 ORTHO05D009219 7.6e-102 374.8 336 63.1
FAN13G0144 Fragaria x ananassa HOM05D007187 ORTHO05D009219 2.2e-101 373.2 302 67.9
Lj5C164T17 Lonicera japonica HOM05D007187 ORTHO05D009219 2.4e-100 369.8 302 66.6
Nitab4.5_0004454g0040 Nicotiana tabacum HOM05D007187 ORTHO05D009219 2.4e-100 369.8 344 60.5
Peaxi162Scf00171g00732 Petunia axillaris HOM05D007187 ORTHO05D009219 5.4e-100 368.6 308 64.9
Prupe.5G239500 Prunus persica HOM05D007187 ORTHO05D009219 5.4e-100 368.6 286 70.6
Sopen03g028810 Solanum pennellii HOM05D007187 ORTHO05D009219 9.3e-100 367.9 360 59.4
Gohir.A07G061100 Gossypium hirsutum HOM05D007187 ORTHO05D009219 1.2e-99 367.5 286 68.9
Gohir.D07G065800 Gossypium hirsutum HOM05D007187 ORTHO05D009219 2.1e-99 366.7 286 68.9
Gorai.001G069400 Gossypium raimondii HOM05D007187 ORTHO05D009219 2.1e-99 366.7 286 68.9
Eucgr.H00587 Eucalyptus grandis HOM05D007187 ORTHO05D009219 2.7e-99 366.3 287 67.9
Solyc03g098110.4 Solanum lycopersicum HOM05D007187 ORTHO05D009219 2.7e-99 366.3 360 59.4
DCAR_014735 Daucus carota HOM05D007187 ORTHO05D009219 3.5e-99 365.9 333 63.1
Manes.14G173900 Manihot esculenta HOM05D007187 ORTHO05D009219 1.0e-98 364.4 285 70.2
Dinv19316 Davidia involucrata HOM05D007187 ORTHO05D009219 3.0e-98 362.8 336 62.5
PGSC0003DMG400031050 Solanum tuberosum HOM05D007187 ORTHO05D009219 3.0e-98 362.8 339 60.5
Aqoxy3G04047 Aquilegia oxysepala HOM05D007187 ORTHO05D009219 8.7e-98 361.3 350 60.6
HanXRQChr01g0002671 Helianthus annuus HOM05D007187 ORTHO05D009219 1.5e-97 360.5 280 68.9
ATR0598G346 Amborella trichopoda HOM05D007187 ORTHO05D009219 2.5e-97 359.8 327 62.1
ECA238G2937 Erigeron canadensis HOM05D007187 ORTHO05D009219 2.5e-97 359.8 279 69.5
Sabra15G0027300 Salix brachista HOM05D007187 ORTHO05D009219 2.5e-97 359.8 302 65.6
Rhsim08G0113600 Rhododendron simsii HOM05D007187 ORTHO05D009219 3.3e-97 359.4 362 59.9
Thhalv10018766m.g Eutrema salsugineum HOM05D007187 ORTHO05D009219 7.3e-97 358.2 280 68.9
Lsat_1_v5_gn_2_15080 Lactuca sativa HOM05D007187 ORTHO05D009219 7.3e-97 358.2 279 69.2
PSO782G3824 Papaver somniferum HOM05D007187 ORTHO05D009219 9.6e-97 357.8 285 68.8
ClCG04G010390 Citrullus lanatus HOM05D007187 ORTHO05D009219 3.6e-96 355.9 290 67.2
AT1G73470 Arabidopsis thaliana HOM05D007187 ORTHO05D009219 8.1e-96 354.8 296 65.2
PSO063G6433 Papaver somniferum HOM05D007187 ORTHO05D009219 8.1e-96 354.8 357 58.8
A02p18740 Brassica napus HOM05D007187 ORTHO05D009219 4.0e-95 352.4 309 63.8
C02p31110 Brassica napus HOM05D007187 ORTHO05D009219 6.9e-95 351.7 308 64.3
Sp5g28650 Schrenkiella parvula HOM05D007187 ORTHO05D009219 1.5e-94 350.5 307 63.2
BolC2t09155H Brassica oleracea HOM05D007187 ORTHO05D009219 2.0e-94 350.1 308 64.0
Sed0020940 Sechium edule HOM05D007187 ORTHO05D009219 2.0e-94 350.1 285 66.7
Carub.0002s2020 Capsella rubella HOM05D007187 ORTHO05D009219 2.6e-94 349.7 280 66.8
MELO3C002156.2 Cucumis melo HOM05D007187 ORTHO05D009219 4.5e-94 349.0 290 66.2
Aa31LG4G3710 Aethionema arabicum HOM05D007187 ORTHO05D009219 7.6e-94 348.2 287 65.9
HPP92_016177 Vanilla planifolia HOM05D007187 ORTHO05D009219 9.9e-94 347.8 300 64.0
AL2G33240 Arabidopsis lyrata HOM05D007187 ORTHO05D009219 4.9e-93 345.5 280 66.1
HPP92_026739 Vanilla planifolia HOM05D007187 ORTHO05D009219 4.9e-93 345.5 300 63.7
CsaV3_1G007400 Cucumis sativus L. HOM05D007187 ORTHO05D009219 1.9e-92 343.6 290 65.5
arahy.Tifrunner.gnm1.ann1.ZBK6XN Arachis hypogaea HOM05D007187 ORTHO05D009219 5.4e-92 342.0 322 61.2
arahy.Tifrunner.gnm1.ann1.RE1P9T Arachis hypogaea HOM05D007187 ORTHO05D009219 1.0e-90 337.8 323 61.0
FvH4_5g17910 Fragaria vesca HOM05D007187 ORTHO05D009219 6.7e-90 335.1 253 70.8
TWI15G0155 Tripterygium wilfordii HOM05D007187 ORTHO05D009219 5.6e-89 332.0 320 60.3
MD14G1241900 Malus domestica HOM05D007187 ORTHO05D009219 7.4e-89 331.6 286 64.3
Nitab4.5_0000021g0400 Nicotiana tabacum HOM05D007187 ORTHO05D009219 9.6e-89 331.3 361 55.7
BraA02t06916Z Brassica rapa HOM05D007187 ORTHO05D009219 1.6e-88 330.5 341 56.9
Hma1.2p1_0471F.1_g159280 Hydrangea macrophylla HOM05D007187 ORTHO05D009219 4.5e-86 322.4 237 71.3
CiPaw.15G149500 Carya illinoinensis HOM05D007187 ORTHO05D009219 2.2e-85 320.1 256 69.9
VMungo0251G3256 Vigna mungo HOM05D007187 ORTHO05D009219 2.2e-85 320.1 281 63.7
LjContig00484g0006565 Lotus japonicus HOM05D007187 ORTHO05D009219 3.8e-85 319.3 291 60.8
Phvul.002G332600 Phaseolus vulgaris HOM05D007187 ORTHO05D009219 3.5e-83 312.8 282 62.8
TPR.G1397 Trifolium pratense HOM05D007187 ORTHO05D009219 2.1e-80 303.5 292 59.2
Glyma.08G057000 Glycine max HOM05D007187 ORTHO05D009219 2.4e-71 273.5 266 59.8
Lalb_Chr16g0386871 Lupinus albus HOM05D007187 ORTHO05D009219 9.0e-71 271.6 274 57.3
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 2.9e-69 266.5 284 55.3
Potri.015G033200 Populus trichocarpa HOM05D007187 ORTHO05D009219 1.0e-66 258.1 233 61.4
Sc10g0008990 Simmondsia chinensis HOM05D007187 ORTHO05D009219 1.7e-64 250.8 281 53.7
vmacro17853 Vaccinium macrocarpon HOM05D007187 ORTHO05D009219 1.1e-63 248.1 365 48.5
SEGI_30595 Sequoiadendron giganteum HOM05D007187 ORTHO05D009219 5.3e-63 245.7 282 51.1
Hund22370 Selenicereus undatus HOM05D007187 ORTHO05D009219 2.6e-62 243.4 310 51.6
EL10Ac8g19490 Beta vulgaris HOM05D007187 ORTHO05D009219 5.0e-61 239.2 353 47.3
Pp3c24_15180 Physcomitrium patens HOM05D007187 ORTHO05D009219 2.5e-60 236.9 364 43.4
AagrBONN_evm.TU.Sc2ySwM_228.159 Anthoceros agrestis HOM05D007187 ORTHO05D009219 2.1e-59 233.8 287 48.8
Haze_18954 Corylus avellana HOM05D007187 ORTHO05D009219 4.7e-59 232.6 316 48.7
Mapoly0047s0078 Marchantia polymorpha HOM05D007187 ORTHO05D009219 3.3e-57 226.5 281 48.0
SMO137G0317 Selaginella moellendorffii HOM05D007187 ORTHO05D009219 4.4e-57 226.1 299 47.8
Psat7g000640 Pisum sativum HOM05D007187 ORTHO05D009219 1.4e-55 221.1 215 55.8
Cpa.g.sc7.111 Carica papaya HOM05D007187 ORTHO05D009219 4.7e-51 206.1 125 82.4
CBR_g23710 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-49 198.7 321 42.1
FAN08G2087 Fragaria x ananassa HOM05D007187 ORTHO05D009219 2.2e-48 197.2 122 80.3
FAN18G0372 Fragaria x ananassa HOM05D007187 ORTHO05D009219 2.2e-48 197.2 122 80.3
MSTRG.10866 Avicennia marina HOM05D007187 ORTHO05D009219 8.2e-48 195.3 103 100.0
Zm00001eb314540 Zea mays HOM05D007187 ORTHO05D009219 3.8e-45 186.4 211 52.1
SMO134G0127 Selaginella moellendorffii HOM05D007187 ORTHO05D009219 1.6e-43 181.0 236 47.5
MSTRG.10865 Avicennia marina HOM05D007187 ORTHO05D009219 1.8e-42 177.6 95 100.0
CARHR066500 Cardamine hirsuta HOM05D007187 ORTHO05D009219 1.8e-42 177.6 140 65.7
FAN08G0101 Fragaria x ananassa HOM05D007187 ORTHO05D009219 3.1e-39 166.8 231 46.8
Os09g0448900 Oryza sativa ssp. japonica HOM05D007187 ORTHO05D009219 4.5e-38 162.9 170 55.9
CDE11G1050 Ceratophyllum demersum HOM05D007187 ORTHO05D009219 6.3e-32 142.5 94 76.6
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.4e-31 141.4 356 35.7
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 7.5e-17 92.4 108 53.7
Cre09.g407450 Chlamydomonas reinhardtii HOM05D007187 ORTHO05D009219 6.4e-16 89.4 401 25.2
Cpa.g.sc7.112 Carica papaya HOM05D007187 ORTHO05D009219 2.4e-15 87.4 89 51.7
Aqoxy3G04293 Aquilegia oxysepala HOM05D007187 ORTHO05D009219 1.3e-13 81.6 87 57.5
Aqoxy3G04295 Aquilegia oxysepala HOM05D007187 ORTHO05D009219 1.3e-13 81.6 87 57.5
RcHm_v2.0_Chr6g0283931 Rosa chinensis HOM05D007187 ORTHO05D009219 4.9e-08 63.2 86 46.5
PRCOL_00002241 Prasinoderma coloniale HOM05D007187 ORTHO05D009219 1.4e-07 61.6 110 39.1


User provided reference genes

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