Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.5e-172 609.4 304 100.0
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 1.7e-118 429.9 297 72.1
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 2.4e-117 426.0 299 70.2
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 2.1e-89 333.2 270 62.6
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 2.2e-86 323.2 308 55.8
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 2.9e-86 322.8 308 55.8
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 1.4e-85 320.5 274 63.5
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 4.1e-85 318.9 303 58.1
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.4e-85 318.5 275 61.1
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 3.5e-84 315.8 286 59.4
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 3.5e-84 315.8 275 60.7
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 7.8e-84 314.7 271 59.0
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.7e-83 313.5 268 59.3
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 5.1e-83 312.0 278 57.6
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 6.6e-83 311.6 310 56.1
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 1.5e-82 310.5 286 57.7
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 1.9e-82 310.1 290 54.1
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 3.3e-82 309.3 270 59.6
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 1.6e-81 307.0 299 56.2
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 1.6e-81 307.0 283 58.0
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 2.8e-81 306.2 297 57.9
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 2.8e-81 306.2 275 54.9
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 8.1e-81 304.7 280 57.5
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 1.8e-80 303.5 270 59.6
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 1.8e-80 303.5 305 55.4
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 1.8e-80 303.5 298 56.0
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 2.3e-80 303.1 289 55.4
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 3.1e-80 302.8 273 60.1
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 5.2e-80 302.0 270 59.3
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 5.2e-80 302.0 299 54.5
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.2e-79 300.8 303 54.8
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 2.6e-79 299.7 272 58.8
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 2.6e-79 299.7 262 57.3
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 4.4e-79 298.9 292 54.1
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 4.4e-79 298.9 270 58.5
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 7.6e-79 298.1 297 53.9
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 3.7e-78 295.8 295 54.2
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 6.4e-78 295.0 303 53.8
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 8.3e-78 294.7 295 53.9
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.1e-77 294.3 299 54.5
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 2.4e-77 293.1 286 55.9
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.2e-76 290.8 274 56.9
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 2.1e-76 290.0 294 53.7
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 4.6e-76 288.9 292 54.8
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 7.8e-76 288.1 287 55.1
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.0e-75 287.7 278 54.0
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 3.9e-75 285.8 294 53.4
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.1e-75 285.4 299 52.8
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 8.6e-75 284.6 292 52.1
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 2.5e-74 283.1 277 57.4
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 5.6e-74 282.0 270 53.3
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.2e-73 280.8 298 52.3
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 2.1e-73 280.0 277 53.4
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 2.1e-73 280.0 276 53.6
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 2.1e-73 280.0 303 51.8
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 3.6e-73 279.3 297 50.8
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 4.7e-73 278.9 298 51.7
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 6.2e-73 278.5 273 52.4
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 8.1e-73 278.1 274 52.9
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.1e-72 277.7 270 53.3
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 2.4e-72 276.6 297 51.2
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 4.0e-72 275.8 293 51.5
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 5.2e-72 275.4 285 50.5
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 3.4e-71 272.7 270 52.6
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.3e-70 270.8 357 47.1
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 2.2e-70 270.0 263 57.0
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 3.8e-70 269.2 276 50.7
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 8.4e-70 268.1 274 51.5
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 1.4e-69 267.3 270 51.9
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 1.9e-69 266.9 271 52.4
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 1.9e-69 266.9 301 48.5
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 2.4e-69 266.5 289 50.2
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 2.4e-69 266.5 274 52.2
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 3.2e-69 266.2 293 50.5
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 4.2e-69 265.8 294 50.7
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 9.3e-69 264.6 299 48.8
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 6.0e-68 261.9 289 47.8
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 3.9e-67 259.2 282 50.7
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.1e-66 257.7 219 59.8
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 9.6e-66 254.6 283 51.6
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.1e-65 253.4 268 53.0
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 2.8e-65 253.1 266 50.4
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 2.8e-65 253.1 279 49.5
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 3.6e-65 252.7 297 46.8
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.4e-64 250.8 263 52.1
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 6.9e-64 248.4 247 53.4
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 9.0e-64 248.1 254 52.4
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 7.6e-63 245.0 316 44.9
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.3e-62 244.2 268 47.4
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 2.9e-62 243.0 294 45.9
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 4.2e-61 239.2 290 47.9
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.2e-60 237.7 290 47.2
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 7.9e-60 235.0 296 47.0
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 7.9e-60 235.0 223 53.4
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.1e-58 231.1 296 44.9
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.5e-58 230.7 266 46.6
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 5.6e-58 228.8 277 45.8
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 1.7e-54 217.2 278 46.0
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 2.2e-54 216.9 269 45.4
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 6.4e-54 215.3 257 45.5
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 2.1e-52 210.3 263 45.6
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 3.3e-50 203.0 194 56.7
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 4.3e-50 202.6 247 46.6
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 1.6e-44 184.1 193 49.7
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 1.5e-39 167.5 201 51.2
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.1e-37 161.4 219 41.6
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 1.1e-34 151.4 280 38.2
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 5.7e-34 149.1 172 48.3
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 3.4e-31 139.8 253 33.6
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 5.1e-27 125.9 207 37.2
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 9.7e-26 121.7 155 41.3
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 1.7e-25 120.9 136 48.5
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-23 114.8 119 48.7
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.5e-22 109.0 221 36.2
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 6.5e-22 109.0 101 58.4
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.7e-20 102.8 130 45.4
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 1.8e-19 100.9 200 36.5
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 2.3e-19 100.5 187 37.4
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 1.5e-18 97.8 169 39.1
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 5.7e-18 95.9 176 35.8
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 1.3e-17 94.7 219 31.5
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.1e-16 90.1 197 34.5
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.1e-16 90.1 197 34.5
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 7.0e-16 89.0 150 36.7
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 7.0e-16 89.0 61 70.5
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 8.5e-14 82.0 130 36.9
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 4.2e-13 79.7 85 47.1
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 7.2e-13 79.0 65 56.9
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 4.0e-11 73.2 96 47.9
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.2e-09 67.4 62 56.5
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.8e-09 66.2 61 54.1
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.8e-09 66.2 61 54.1
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 2.4e-08 63.9 106 38.7
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.1e-08 63.2 151 33.8
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.2e-07 61.6 55 61.8
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 1.0e-06 58.5 68 42.6
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 1.0e-06 58.5 68 42.6
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 3.8e-06 56.6 145 29.0


User provided reference genes

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