Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 3.6e-84 314.7 142 100.0
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 7.9e-79 297.0 142 93.7
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 4.3e-69 264.6 142 80.3
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 2.1e-68 262.3 138 79.0
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.2e-66 256.5 142 77.5
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.1e-64 250.0 139 74.8
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.9e-64 249.2 134 79.1
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.9e-64 249.2 138 76.8
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 9.3e-64 246.9 142 73.9
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.6e-63 246.1 134 76.1
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 4.6e-63 244.6 142 73.9
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 7.9e-63 243.8 142 73.2
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 7.9e-63 243.8 142 73.2
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.0e-62 243.4 142 70.4
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 2.3e-62 242.3 142 72.5
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.0e-62 241.9 141 73.0
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 5.1e-62 241.1 135 74.8
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 8.7e-62 240.4 133 75.2
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 8.7e-62 240.4 141 72.3
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 8.7e-62 240.4 138 73.9
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.5e-61 239.6 134 76.1
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.9e-61 239.2 142 71.8
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 2.5e-61 238.8 129 76.7
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.3e-61 238.4 135 74.1
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 3.3e-61 238.4 139 74.8
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 3.3e-61 238.4 135 76.3
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.3e-61 238.0 141 71.6
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.3e-61 238.0 141 71.6
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 7.4e-61 237.3 141 72.3
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 7.4e-61 237.3 134 73.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 7.4e-61 237.3 135 75.6
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 9.7e-61 236.9 135 74.8
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.6e-60 236.1 135 72.6
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.6e-60 236.1 142 71.1
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 2.1e-60 235.7 139 71.2
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 2.1e-60 235.7 135 74.1
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 2.8e-60 235.3 128 78.1
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 3.7e-60 235.0 134 72.4
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 6.3e-60 234.2 134 74.6
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 6.3e-60 234.2 135 74.8
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 8.2e-60 233.8 134 74.6
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.1e-59 233.4 134 72.4
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.1e-59 233.4 134 73.1
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.8e-59 232.6 133 71.4
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 2.4e-59 232.3 135 73.3
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 2.4e-59 232.3 135 70.4
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 3.1e-59 231.9 135 72.6
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 3.1e-59 231.9 134 70.9
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 5.3e-59 231.1 135 69.6
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 5.3e-59 231.1 137 69.3
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 6.9e-59 230.7 139 67.6
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 9.0e-59 230.3 135 71.1
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 9.0e-59 230.3 135 70.4
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 9.0e-59 230.3 137 69.3
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 2.0e-58 229.2 135 71.9
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 2.0e-58 229.2 134 71.6
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 2.0e-58 229.2 137 69.3
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 2.6e-58 228.8 134 71.6
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.4e-58 228.4 137 68.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.4e-58 228.4 139 69.8
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 4.5e-58 228.0 137 68.6
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.9e-58 227.6 127 74.0
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 5.9e-58 227.6 139 67.6
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.0e-57 226.9 139 69.8
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.0e-57 226.9 134 68.7
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 68.7
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.7e-57 226.1 135 68.1
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.7e-57 226.1 131 70.2
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 2.2e-57 225.7 132 71.2
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.9e-57 225.3 135 66.7
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.9e-57 225.3 135 71.1
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 3.8e-57 224.9 135 70.4
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 6.5e-57 224.2 134 67.2
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 6.5e-57 224.2 135 67.4
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 8.5e-57 223.8 131 74.0
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 1.1e-56 223.4 134 68.7
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 1.1e-56 223.4 134 67.9
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.4e-56 223.0 134 68.7
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.4e-56 223.0 134 68.7
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.4e-56 223.0 135 70.4
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.4e-56 223.0 135 69.6
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.9e-56 222.6 137 67.2
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 2.5e-56 222.2 134 67.2
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 2.5e-56 222.2 134 70.1
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 2.5e-56 222.2 132 68.9
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 5.5e-56 221.1 134 67.9
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 5.5e-56 221.1 134 67.9
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 5.5e-56 221.1 135 70.4
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 9.3e-56 220.3 132 68.9
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.2e-55 219.9 134 64.9
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.2e-55 219.9 137 67.9
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-55 219.5 139 67.6
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 2.1e-55 219.2 134 66.4
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 2.1e-55 219.2 133 67.7
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 2.1e-55 219.2 135 70.4
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 2.1e-55 219.2 134 69.4
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 4.6e-55 218.0 134 64.9
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.6e-55 218.0 137 65.7
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 6.1e-55 217.6 126 73.0
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 7.9e-55 217.2 133 66.9
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 5.1e-54 214.5 135 65.9
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 8.7e-54 213.8 133 66.2
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.1e-53 213.4 136 65.4
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.9e-53 212.6 121 73.6
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.9e-53 212.6 131 69.5
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.3e-53 211.8 133 68.4
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.4e-53 210.7 133 67.7
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 7.4e-53 210.7 128 69.5
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.3e-52 209.9 120 75.0
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.3e-52 209.9 129 68.2
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.8e-52 208.8 135 66.7
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 4.8e-52 208.0 181 55.2
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.4e-51 206.5 133 66.9
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.1e-51 205.3 121 72.7
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 5.3e-51 204.5 121 71.9
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 6.9e-51 204.1 125 66.4
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 6.9e-51 204.1 125 68.0
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.5e-50 203.0 129 67.4
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 2.6e-50 202.2 140 60.7
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.3e-49 199.9 121 67.8
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 6.5e-49 197.6 135 62.2
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 8.5e-49 197.2 131 63.4
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.5e-48 195.7 126 64.3
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 2.5e-48 195.7 129 64.3
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.2e-47 193.4 116 69.0
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 4.6e-47 191.4 121 67.8
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-46 189.5 137 61.3
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 5.1e-46 188.0 129 59.7
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 5.1e-46 188.0 130 58.5
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-45 186.4 137 62.8
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 2.4e-43 179.1 101 72.3
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.9e-43 177.6 130 56.9
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.5e-42 176.4 101 72.3
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.7e-41 172.9 130 55.4
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 5.0e-41 171.4 96 78.1
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.6e-39 165.2 127 56.7
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.6e-39 165.2 125 60.0
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.8e-38 162.9 136 58.1
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.3e-37 158.7 131 55.0
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 7.0e-35 151.0 96 67.7
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.7e-33 146.4 141 45.4
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 1.9e-32 142.9 98 59.2
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.0e-31 137.5 85 70.6
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 8.0e-31 137.5 83 71.1
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-25 120.2 72 66.7
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.9e-24 116.3 74 67.6
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-22 109.8 112 48.2
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.7e-20 102.1 78 57.7
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 2.4e-19 99.4 80 57.5
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.4e-19 98.2 63 68.3


User provided reference genes

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