Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.2e-97 359.8 176 100.0
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.7e-89 332.0 176 90.3
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 1.4e-88 329.7 176 90.3
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.1e-85 320.1 176 87.5
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.4e-85 319.7 176 86.9
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 9.1e-85 317.0 176 86.4
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 9.1e-85 317.0 176 86.4
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 9.1e-85 317.0 176 86.4
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 1.2e-84 316.6 176 86.4
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 7.7e-84 313.9 176 85.2
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 1.7e-83 312.8 168 88.7
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 1.9e-82 309.3 176 84.7
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 2.5e-82 308.9 176 83.0
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 6.1e-81 304.3 176 81.8
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 1.4e-80 303.1 176 82.4
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 2.3e-80 302.4 166 86.1
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 5.2e-80 301.2 176 81.8
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 2.0e-79 299.3 176 80.1
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.3e-78 296.6 167 83.8
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 1.7e-78 296.2 170 81.8
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 6.3e-78 294.3 176 80.7
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 8.2e-78 293.9 176 81.2
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 1.4e-77 293.1 177 80.2
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.8e-77 292.7 176 79.0
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 5.3e-77 291.2 176 77.8
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 7.0e-77 290.8 177 81.4
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 1.2e-76 290.0 177 79.7
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 1.6e-76 289.7 177 79.1
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 2.0e-76 289.3 176 81.2
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 2.7e-76 288.9 172 78.5
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 5.9e-76 287.7 176 80.1
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 7.7e-76 287.3 176 77.8
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 1.0e-75 287.0 164 84.1
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.0e-75 287.0 166 81.9
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 2.9e-75 285.4 176 79.5
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 8.5e-75 283.9 176 77.8
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 8.5e-75 283.9 177 77.4
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.1e-74 283.5 177 79.1
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.1e-74 283.5 176 78.4
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 1.5e-74 283.1 176 77.8
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.5e-74 283.1 175 79.4
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.9e-74 282.7 176 77.8
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 2.5e-74 282.3 186 75.3
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 3.2e-74 282.0 176 78.4
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 4.2e-74 281.6 181 78.5
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.5e-74 281.2 176 77.3
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.5e-74 281.2 176 77.3
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 7.2e-74 280.8 178 75.8
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 1.6e-73 279.6 176 76.1
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.6e-73 279.6 177 78.5
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 2.7e-73 278.9 177 78.0
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 3.6e-73 278.5 177 76.8
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 3.6e-73 278.5 186 74.2
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 4.7e-73 278.1 167 79.0
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 6.1e-73 277.7 176 74.4
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 1.4e-72 276.6 177 77.4
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 1.8e-72 276.2 177 77.4
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 2.3e-72 275.8 176 75.0
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 8.8e-72 273.9 176 75.0
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.2e-71 273.5 176 73.9
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 1.5e-71 273.1 176 73.3
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 2.0e-71 272.7 176 75.6
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 2.0e-71 272.7 177 74.0
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 3.4e-71 271.9 177 75.7
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 4.4e-71 271.6 175 74.9
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 4.4e-71 271.6 167 80.8
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 7.5e-71 270.8 176 72.7
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 7.5e-71 270.8 176 72.7
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 7.5e-71 270.8 176 72.7
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 7.5e-71 270.8 176 75.0
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.7e-70 269.6 175 73.1
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.7e-70 269.6 175 73.1
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.7e-70 269.6 176 72.7
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 2.2e-70 269.2 166 77.7
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 2.2e-70 269.2 183 74.9
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 2.2e-70 269.2 175 73.1
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.7e-70 268.5 175 72.6
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 3.7e-70 268.5 176 71.6
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.3e-70 267.7 161 82.6
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 6.3e-70 267.7 175 72.6
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 6.3e-70 267.7 176 73.9
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 6.3e-70 267.7 176 73.3
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.4e-69 266.5 177 72.3
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.8e-69 266.2 172 72.7
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 3.1e-69 265.4 167 78.4
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 3.1e-69 265.4 176 73.3
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 4.1e-69 265.0 170 73.5
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 4.1e-69 265.0 167 77.8
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 4.1e-69 265.0 171 75.4
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 4.1e-69 265.0 176 73.3
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 5.4e-69 264.6 166 75.3
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 5.4e-69 264.6 174 72.4
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 5.4e-69 264.6 172 72.7
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 7.0e-69 264.2 153 81.7
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.2e-68 263.5 168 76.8
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.2e-68 263.5 178 73.6
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.6e-68 263.1 174 71.3
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 2.0e-68 262.7 176 72.7
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 2.0e-68 262.7 174 73.0
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 3.5e-68 261.9 169 72.8
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 3.5e-68 261.9 169 72.8
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 3.5e-68 261.9 169 72.8
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 3.5e-68 261.9 169 72.8
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 4.5e-68 261.5 174 72.4
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 5.9e-68 261.2 228 61.0
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 7.7e-68 260.8 169 72.2
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 2.9e-67 258.8 178 71.3
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 5.0e-67 258.1 178 68.5
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.5e-67 257.7 169 71.6
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.1e-66 256.9 171 70.8
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 9.5e-66 253.8 167 71.9
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 1.2e-65 253.4 164 72.6
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 1.2e-65 253.4 175 69.1
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.6e-65 253.1 165 74.5
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.6e-65 253.1 168 73.2
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 2.8e-65 252.3 164 72.0
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.8e-65 252.3 167 71.3
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 2.8e-65 252.3 176 69.9
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 4.7e-65 251.5 168 70.8
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 2.3e-64 249.2 178 67.4
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 4.0e-64 248.4 177 65.5
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 5.2e-64 248.1 176 68.2
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 6.8e-64 247.7 174 66.1
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 1.2e-63 246.9 178 67.4
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.2e-63 246.9 156 77.6
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 7.5e-63 244.2 158 72.8
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 6.3e-62 241.1 174 65.5
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 8.3e-62 240.7 171 67.3
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 3.1e-61 238.8 162 71.0
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 5.4e-61 238.0 175 65.7
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 1.6e-60 236.5 170 68.2
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 2.0e-60 236.1 167 68.3
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.0e-59 233.8 167 66.5
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 6.1e-57 224.6 123 85.4
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 6.1e-57 224.6 123 85.4
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.6e-52 209.9 167 61.1
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 1.6e-52 209.9 167 59.9
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 1.6e-49 199.9 124 79.8
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 2.8e-49 199.1 138 68.1
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 6.2e-49 198.0 123 74.8
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 1.4e-48 196.8 114 82.5
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 2.3e-48 196.1 123 76.4
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 2.4e-45 186.0 191 49.7
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.4e-45 186.0 116 78.4
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 8.1e-41 171.0 174 50.0
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.6e-36 155.2 98 71.4
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 4.6e-36 155.2 84 83.3
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.0e-35 154.1 105 68.6
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.3e-35 152.9 102 70.6
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 9.9e-31 137.5 95 71.6
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 1.8e-24 116.7 111 58.6
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.6e-23 112.8 60 80.0
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 5.8e-23 111.7 163 36.8
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 1.4e-21 107.1 174 36.8
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.7e-19 100.1 141 40.4
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.7e-19 100.1 116 43.1
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.3e-19 99.8 87 55.2
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 3.9e-19 99.0 97 50.5
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 1.4e-13 80.5 54 70.4
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.6e-12 77.0 48 70.8
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 1.0e-11 74.3 52 69.2
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.8e-11 73.6 50 68.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 2.3e-11 73.2 43 81.4


User provided reference genes

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