Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 4.1e-125 451.4 234 100.0
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 1.6e-89 333.2 232 77.2
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 7.6e-79 297.7 220 72.7
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 2.6e-71 272.7 224 68.8
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 7.1e-69 264.6 224 63.8
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.7e-68 262.7 226 61.9
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 8.7e-67 257.7 228 61.8
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 1.1e-66 257.3 228 61.8
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 3.3e-66 255.8 224 60.7
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 4.3e-66 255.4 228 60.1
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 7.4e-66 254.6 226 60.2
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 9.6e-66 254.2 228 61.8
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 9.6e-66 254.2 233 62.2
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 2.8e-65 252.7 228 61.4
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.8e-65 252.7 216 63.0
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 2.8e-65 252.7 259 59.5
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 3.7e-65 252.3 223 61.4
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 8.1e-65 251.1 224 61.2
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 8.1e-65 251.1 228 61.8
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 3.1e-64 249.2 228 58.8
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 1.2e-63 247.3 229 58.1
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 2.0e-63 246.5 231 57.1
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 3.4e-63 245.7 228 58.8
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 4.5e-63 245.4 227 58.1
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 7.6e-63 244.6 229 57.2
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.3e-62 243.8 228 61.0
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.3e-62 243.8 226 59.3
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 1.7e-62 243.4 230 60.0
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 3.8e-62 242.3 228 57.5
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 3.8e-62 242.3 221 62.0
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 4.9e-62 241.9 231 58.0
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 4.9e-62 241.9 228 58.3
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.1e-61 240.7 213 61.0
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.4e-61 240.4 224 58.9
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.4e-61 240.4 243 57.2
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.9e-61 240.0 216 59.7
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 1.9e-61 240.0 224 59.8
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 2.5e-61 239.6 218 60.6
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 2.5e-61 239.6 228 57.0
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 3.2e-61 239.2 232 59.5
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 3.2e-61 239.2 214 61.7
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 5.5e-61 238.4 215 62.8
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 9.3e-61 237.7 221 57.9
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 1.6e-60 236.9 217 59.0
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 2.1e-60 236.5 219 58.0
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 2.7e-60 236.1 228 55.7
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 3.5e-60 235.7 206 60.7
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 4.6e-60 235.3 228 57.0
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 6.0e-60 235.0 217 59.4
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 7.9e-60 234.6 209 62.2
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 1.0e-59 234.2 219 57.1
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.8e-59 233.4 216 58.3
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.3e-59 233.0 232 56.0
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 3.9e-59 232.3 212 59.0
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 3.9e-59 232.3 216 59.7
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 5.1e-59 231.9 229 57.2
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 5.1e-59 231.9 216 57.4
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.1e-58 230.7 224 58.0
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 1.1e-58 230.7 165 70.3
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.9e-58 229.9 227 57.7
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 1.9e-58 229.9 227 56.8
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 1.9e-58 229.9 229 57.6
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 3.3e-58 229.2 216 56.5
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 5.7e-58 228.4 214 60.7
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 5.7e-58 228.4 227 55.9
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.6e-57 226.9 164 72.0
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 2.8e-57 226.1 224 57.6
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 2.8e-57 226.1 227 55.9
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 3.7e-57 225.7 165 73.3
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 4.8e-57 225.3 224 56.7
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 8.2e-57 224.6 220 58.6
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 8.2e-57 224.6 224 56.7
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 1.1e-56 224.2 178 66.3
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.8e-56 223.4 217 56.7
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 1.8e-56 223.4 215 57.7
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 1.8e-56 223.4 146 76.7
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 2.4e-56 223.0 137 81.8
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 3.1e-56 222.6 226 58.0
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 3.1e-56 222.6 217 56.2
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.1e-56 222.2 211 57.8
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 4.1e-56 222.2 189 64.0
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 5.3e-56 221.9 222 56.8
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 5.3e-56 221.9 217 56.7
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 5.3e-56 221.9 229 57.6
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 9.0e-56 221.1 228 56.1
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 1.2e-55 220.7 226 55.8
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 1.2e-55 220.7 226 55.8
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 1.5e-55 220.3 227 56.8
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 1.5e-55 220.3 225 56.9
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 2.0e-55 219.9 231 54.5
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 2.0e-55 219.9 159 74.2
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 2.6e-55 219.5 227 55.5
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 2.6e-55 219.5 224 56.2
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 2.6e-55 219.5 227 55.5
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 2.6e-55 219.5 232 55.2
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 2.6e-55 219.5 216 58.3
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.0e-54 217.6 225 56.4
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.3e-54 217.2 217 56.7
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 2.2e-54 216.5 193 60.6
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 3.8e-54 215.7 229 55.9
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 8.5e-54 214.5 224 56.7
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.9e-53 213.4 216 56.5
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 2.5e-53 213.0 152 71.7
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 3.2e-53 212.6 217 54.8
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 3.2e-53 212.6 195 59.0
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 7.2e-53 211.5 137 77.4
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 9.3e-53 211.1 157 71.3
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 9.3e-53 211.1 214 56.1
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.3e-51 207.2 167 66.5
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.8e-51 206.8 166 65.1
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 3.0e-51 206.1 214 56.1
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 2.2e-49 199.9 211 55.0
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.1e-48 197.6 192 56.2
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.4e-48 197.2 140 72.1
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 9.1e-48 194.5 210 54.3
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 1.0e-46 191.0 217 53.0
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 1.0e-46 191.0 142 71.1
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.3e-46 190.7 217 52.1
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 2.9e-46 189.5 206 54.9
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 5.7e-42 175.3 160 59.4
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 9.1e-40 167.9 153 60.1
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.5e-39 167.2 128 67.2
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 1.0e-38 164.5 128 63.3
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.4e-37 160.6 135 61.5
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 3.2e-37 159.5 195 50.8
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 9.4e-37 157.9 137 60.6
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.1e-32 142.9 224 42.0
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 7.0e-32 141.7 115 65.2
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 6.5e-30 135.2 150 51.3
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 2.5e-29 133.3 225 40.0
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 2.5e-29 133.3 159 50.9
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.8e-27 127.1 127 59.1
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 2.6e-26 123.2 80 82.5
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 8.5e-22 108.2 62 83.9
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 8.5e-22 108.2 62 83.9
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.7e-17 92.8 68 67.6
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 2.0e-15 87.0 84 58.3
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 4.7e-12 75.9 141 36.2
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 7.5e-10 68.6 45 75.6


User provided reference genes

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