Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 2934.1 1462 100.0
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 2142.5 1462 73.9
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1973.0 1505 68.3
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1962.2 1465 69.1
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1734.2 1493 60.3
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1636.7 1499 59.4
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1635.2 1495 58.9
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1620.9 1516 56.9
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1614.7 1489 57.6
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1589.7 1483 57.0
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1579.7 1486 57.5
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1571.2 1484 57.0
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1566.6 1498 56.4
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1561.6 1579 55.0
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1557.3 1482 55.5
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1556.6 1488 56.7
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1543.5 1488 56.4
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1526.1 1460 55.4
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1525.0 1472 56.5
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1523.8 1477 55.4
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1520.8 1482 54.9
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1520.0 1486 55.0
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1514.6 1475 55.3
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1512.7 1482 54.8
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1505.0 1481 54.4
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1500.3 1505 54.6
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1496.9 1492 54.6
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1492.2 1481 54.3
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1488.4 1481 54.2
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1484.9 1491 54.4
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1484.9 1502 53.7
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1474.5 1488 53.8
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1473.4 1577 51.7
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1472.2 1435 55.1
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1471.8 1437 56.2
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1471.1 1481 54.2
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1464.9 1530 53.7
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1458.7 1474 53.2
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1450.3 1483 53.3
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1444.9 1443 54.7
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1436.8 1485 52.4
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1436.0 1489 52.0
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1432.9 1497 52.6
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1431.4 1376 56.2
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1426.0 1571 50.9
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1421.8 1491 52.9
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1416.0 1485 52.6
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1411.0 1486 52.2
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1407.1 1534 50.9
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1406.0 1484 51.9
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1401.7 1480 51.4
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1398.6 1488 51.9
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1397.5 1487 52.2
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1393.3 1484 51.6
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1389.8 1474 51.6
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1388.2 1485 51.6
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1385.2 1483 50.8
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1384.4 1496 50.5
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1384.4 1486 51.7
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1377.5 1480 51.3
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1370.1 1486 50.9
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1367.4 1481 51.0
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1367.1 1370 54.7
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1365.1 1489 50.8
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1360.9 1479 50.8
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1359.0 1359 55.3
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1359.0 1466 50.8
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1353.2 1464 50.3
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1347.4 1471 50.2
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1347.4 1471 50.2
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1347.0 1477 51.1
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1343.9 1477 50.0
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1342.0 1472 50.5
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1341.3 1473 50.2
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1336.6 1473 49.9
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1335.9 1488 49.6
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1335.5 1494 50.7
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1334.3 1471 50.0
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1334.3 1471 50.0
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1334.3 1471 50.0
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1327.8 1478 49.5
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1307.0 1477 49.0
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1295.8 1492 49.4
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1291.2 1548 47.8
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1273.8 1489 48.0
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1253.8 1540 46.6
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1245.3 1132 58.7
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1221.5 1331 50.6
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1212.6 1370 48.8
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1192.6 1376 48.0
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1172.9 1509 44.7
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1162.1 1493 45.5
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1161.4 1104 57.3
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1108.2 1409 45.4
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1105.9 1446 43.5
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 5.7e-241 839.0 1562 36.6
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 3.5e-230 803.1 963 46.3
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.2e-183 647.1 483 71.4
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.3e-181 641.7 483 69.6
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 9.3e-167 592.4 1472 30.5
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 1.3e-163 582.0 783 43.0
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.6e-142 511.9 1037 33.7
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 2.9e-136 491.1 725 40.1
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 1.6e-102 379.0 418 50.0
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 7.6e-44 184.1 531 28.2
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 2.2e-43 182.6 163 62.0
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 8.5e-43 180.6 158 57.0
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 7.7e-36 157.5 107 68.2
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 3.7e-30 138.7 91 71.4
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 5.3e-29 134.8 89 66.3
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 5.2e-24 118.2 87 66.7
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 5.2e-24 118.2 87 66.7
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.6e-20 106.7 81 69.1
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.0e-16 94.0 65 75.4
Actinidia33727 Actinidia chinensis HOM05D006693 ORTHO05D008092 4.0e-08 65.5 101 38.6
MCO04G335 Micromonas commoda HOM05D006693 ORTHO05D008092 1.3e-06 60.5 125 31.2
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 1.3e-06 60.5 83 43.4
HanXRQChr15g0483621 Helianthus annuus HOM05D055280 ORTHO05D008092 8.3e-06 57.8 32 78.1
HanXRQChr17g0538801 Helianthus annuus HOM05D055280 ORTHO05D008092 8.3e-06 57.8 32 78.1


User provided reference genes

Program Settings