Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 1.5e-121 439.5 215 100.0
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 5.5e-108 394.4 215 88.4
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 7.2e-108 394.0 214 88.3
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 1.2e-107 393.3 214 86.9
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 2.7e-107 392.1 215 87.9
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 4.6e-107 391.3 215 87.4
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 2.3e-106 389.0 215 87.4
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 5.7e-105 384.4 215 86.5
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 5.7e-105 384.4 214 86.4
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 1.3e-104 383.3 215 85.6
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.6e-104 382.9 215 86.5
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 3.1e-103 378.6 215 83.3
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 4.1e-103 378.3 215 85.1
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 4.1e-103 378.3 215 85.1
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 4.1e-103 378.3 215 84.7
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 5.3e-103 377.9 218 84.4
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.2e-102 376.7 215 84.2
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.2e-102 376.7 215 84.7
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 1.5e-102 376.3 215 86.5
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 2.0e-102 375.9 216 82.9
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 2.0e-102 375.9 215 85.1
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 1.7e-101 372.9 215 83.7
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 6.5e-101 370.9 216 81.9
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 1.4e-100 369.8 222 78.8
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 2.5e-100 369.0 214 84.1
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 2.5e-100 369.0 214 84.1
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 1.2e-99 366.7 216 83.3
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 2.7e-99 365.5 217 81.6
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 2.7e-99 365.5 213 83.6
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 3.6e-99 365.2 217 81.6
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 7.9e-99 364.0 217 81.6
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 1.0e-98 363.6 218 79.8
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 1.4e-98 363.2 217 80.2
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 2.3e-98 362.5 219 78.1
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 2.3e-98 362.5 219 79.9
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 3.0e-98 362.1 224 79.9
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 3.9e-98 361.7 216 78.7
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 3.9e-98 361.7 217 80.6
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 3.9e-98 361.7 217 81.6
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 5.1e-98 361.3 216 80.6
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 8.8e-98 360.5 216 80.6
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 4.3e-97 358.2 216 81.0
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 7.4e-97 357.5 216 79.6
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 9.7e-97 357.1 217 79.7
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 1.3e-96 356.7 217 79.7
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 1.3e-96 356.7 234 76.1
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 1.7e-96 356.3 214 78.5
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 2.2e-96 355.9 217 77.9
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 2.8e-96 355.5 219 77.6
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.8e-96 355.5 216 79.6
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 3.7e-96 355.1 218 77.5
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 4.8e-96 354.8 212 79.2
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 4.8e-96 354.8 214 77.6
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 6.3e-96 354.4 217 77.9
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 6.3e-96 354.4 221 77.4
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 1.4e-95 353.2 189 86.2
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 1.4e-95 353.2 217 78.3
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 1.8e-95 352.8 217 77.4
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 2.4e-95 352.4 218 77.1
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 3.1e-95 352.1 217 78.3
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 4.1e-95 351.7 217 78.3
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 5.3e-95 351.3 220 76.4
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 5.3e-95 351.3 218 77.5
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 6.9e-95 350.9 189 85.2
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 1.5e-94 349.7 215 77.2
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 5.9e-94 347.8 216 76.9
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 5.9e-94 347.8 210 80.5
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 5.9e-94 347.8 218 78.9
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 7.7e-94 347.4 212 77.4
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 1.3e-93 346.7 217 76.5
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 1.7e-93 346.3 219 75.3
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 2.9e-93 345.5 249 70.3
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 3.8e-93 345.1 223 77.1
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 3.8e-93 345.1 220 77.3
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 5.0e-93 344.7 223 77.1
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 6.5e-93 344.4 216 75.9
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 6.5e-93 344.4 186 84.9
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 8.5e-93 344.0 191 83.2
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 8.5e-93 344.0 215 75.3
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 8.5e-93 344.0 218 74.3
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.1e-92 343.6 186 84.9
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.4e-92 343.2 218 75.7
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 1.9e-92 342.8 216 75.5
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 2.5e-92 342.4 215 76.3
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 3.2e-92 342.0 215 74.4
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 3.2e-92 342.0 215 74.9
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 4.2e-92 341.7 215 76.3
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 4.2e-92 341.7 215 76.3
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 4.2e-92 341.7 218 75.2
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 4.2e-92 341.7 184 85.3
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 4.2e-92 341.7 186 84.4
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 5.5e-92 341.3 215 75.8
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 5.5e-92 341.3 216 75.9
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 5.5e-92 341.3 215 76.3
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 5.5e-92 341.3 216 75.0
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 5.5e-92 341.3 215 74.9
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 7.2e-92 340.9 212 76.9
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 9.4e-92 340.5 215 76.3
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 9.4e-92 340.5 215 76.3
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 9.4e-92 340.5 215 75.3
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.6e-91 339.7 217 76.0
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.6e-91 339.7 217 76.0
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 1.6e-91 339.7 215 74.0
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 1.6e-91 339.7 217 76.5
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 2.1e-91 339.3 214 75.7
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 2.1e-91 339.3 252 67.1
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 2.1e-91 339.3 215 75.8
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 2.1e-91 339.3 220 74.1
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 2.7e-91 339.0 215 75.3
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 3.6e-91 338.6 217 74.2
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 3.6e-91 338.6 185 83.2
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 1.0e-90 337.0 183 85.2
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 1.0e-90 337.0 182 83.0
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.4e-90 336.7 220 73.2
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.4e-90 336.7 224 72.8
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 1.4e-90 336.7 184 83.2
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 2.3e-90 335.9 220 74.1
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 7.4e-89 330.9 221 72.4
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 2.8e-88 328.9 240 70.4
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 2.8e-88 328.9 207 74.4
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 8.2e-88 327.4 219 70.8
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 1.1e-87 327.0 179 82.7
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 1.1e-87 327.0 221 73.8
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 5.3e-87 324.7 186 78.0
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 5.3e-87 324.7 186 78.5
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 3.5e-86 322.0 183 79.8
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 5.9e-86 321.2 268 61.2
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 1.7e-85 319.7 216 70.8
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 1.7e-85 319.7 216 70.8
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 2.2e-85 319.3 216 70.8
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 2.2e-85 319.3 216 70.8
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 5.0e-85 318.2 173 83.2
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 1.9e-84 316.2 190 78.9
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 5.5e-84 314.7 168 85.7
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 5.5e-84 314.7 168 85.7
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 3.1e-79 298.9 208 67.3
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 3.5e-78 295.4 209 68.4
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 5.9e-78 294.7 212 66.0
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 2.2e-77 292.7 211 66.4
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 9.4e-76 287.3 200 66.0
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 9.8e-73 277.3 210 61.9
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 2.8e-72 275.8 211 59.2
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 6.3e-72 274.6 203 65.0
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 3.8e-69 265.4 181 68.5
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 6.1e-67 258.1 189 62.4
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 2.8e-64 249.2 208 59.6
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 3.1e-63 245.7 220 61.4
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.5e-60 236.9 237 57.0
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 2.5e-60 236.1 178 63.5
Dinv21405 Davidia involucrata HOM05D003659 ORTHO05D004298 2.3e-58 229.6 123 84.6
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 4.1e-55 218.8 226 52.2
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 2.5e-52 209.5 128 80.5
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 6.8e-50 201.4 184 53.3
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 1.2e-49 200.7 211 48.3
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 2.6e-49 199.5 117 81.2
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 2.9e-48 196.1 181 54.1
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 2.9e-48 196.1 117 77.8
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 8.3e-48 194.5 117 80.3
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 1.1e-47 194.1 117 80.3
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 3.2e-47 192.6 113 80.5
THA.LOC104804845 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 1.2e-46 190.7 105 79.0
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 1.9e-44 183.3 118 76.3
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 2.8e-43 179.5 123 73.2
TPR.G40670 Trifolium pratense HOM05D003659 ORTHO05D004298 6.4e-40 168.3 87 86.2
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 3.2e-39 166.0 117 69.2
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 5.4e-39 165.2 106 78.3
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 1.2e-38 164.1 108 74.1
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 3.0e-37 159.5 108 69.4
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 3.9e-37 159.1 184 40.8
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 1.4e-31 140.6 75 84.0
EL10Ac2g04128 Beta vulgaris HOM05D003659 ORTHO05D004298 7.8e-30 134.8 148 48.6
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 3.3e-28 129.4 75 80.0
Ca_15770_v3 Cicer arietinum L. HOM05D003659 ORTHO05D004298 5.6e-28 128.6 67 85.1
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 1.5e-25 120.6 62 82.3
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 2.1e-22 110.2 80 68.8
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.0e-21 107.8 121 50.4
Hma1.2p1_0302F.1_g118750 Hydrangea macrophylla HOM05D003659 ORTHO05D004298 1.4e-18 97.4 61 78.7
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 1.8e-18 97.1 59 71.2
Haze_27667 Corylus avellana HOM05D003659 ORTHO05D004298 5.3e-18 95.5 116 40.5
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 9.0e-18 94.7 73 72.6
Cfa026278 Carpinus fangiana HOM05D003659 ORTHO05D121859 1.6e-11 73.9 174 31.0
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 8.1e-11 71.6 193 30.6
SHI37098 Sapria himalayana HOM05D003659 ORTHO05D004298 2.0e-09 67.0 48 62.5
A10p26590 Brassica napus HOM05D001880 ORTHO05D004730 2.9e-08 63.2 32 78.1
CAN.G1490.7 Capsicum annuum HOM05D003659 ORTHO05D004298 7.1e-07 58.5 44 65.9
SHI48633 Sapria himalayana HOM05D003659 ORTHO05D004298 7.1e-07 58.5 38 65.8
SHI20750 Sapria himalayana HOM05D003659 ORTHO05D004298 1.2e-06 57.8 48 58.3


User provided reference genes

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