Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 5.1e-199 697.6 364 100.0
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 8.4e-109 397.9 281 75.1
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 9.3e-108 394.4 268 75.0
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 1.7e-106 390.2 273 72.9
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.3e-104 384.0 226 81.9
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-103 380.9 269 70.3
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.8e-103 380.2 214 84.6
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.8e-103 380.2 214 84.6
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 9.0e-103 377.9 229 78.6
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 2.1e-99 366.7 218 81.7
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 8.7e-98 361.3 227 78.0
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.5e-97 359.8 226 77.9
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 5.6e-97 358.6 214 80.8
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.6e-96 357.1 222 77.5
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 4.8e-96 355.5 214 79.9
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.8e-95 353.6 227 76.7
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 2.4e-95 353.2 215 77.2
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 4.0e-95 352.4 213 81.2
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.3e-95 352.1 228 76.3
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.9e-95 351.7 230 76.5
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 9.0e-95 351.3 230 75.2
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.5e-94 350.5 213 79.3
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.5e-94 350.5 227 74.4
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 3.4e-94 349.4 230 74.8
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 4.5e-94 349.0 213 79.8
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 4.5e-94 349.0 228 75.4
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.8e-94 348.6 227 75.3
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 7.6e-94 348.2 221 76.0
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.0e-93 347.8 224 73.7
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.3e-93 347.4 226 75.2
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 6.4e-93 345.1 214 76.2
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.1e-92 344.4 224 75.9
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 1.4e-92 344.0 230 73.5
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.9e-92 343.6 225 74.2
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.5e-92 343.2 228 74.1
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 3.2e-92 342.8 228 75.0
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.2e-92 342.8 224 75.9
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 4.2e-92 342.4 243 70.8
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 4.2e-92 342.4 243 70.8
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 7.1e-92 341.7 213 77.0
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 2.1e-91 340.1 269 62.8
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.1e-91 340.1 210 79.0
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 2.7e-91 339.7 216 75.5
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.7e-91 339.7 211 76.8
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 4.6e-91 339.0 226 72.6
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.0e-90 337.8 254 68.1
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.3e-90 337.4 225 72.9
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.3e-90 337.4 220 74.5
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.8e-90 337.0 229 72.1
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 3.0e-90 336.3 221 73.3
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 3.0e-90 336.3 228 72.8
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 3.0e-90 336.3 233 72.1
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 5.1e-90 335.5 211 75.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 5.1e-90 335.5 213 75.1
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 8.7e-90 334.7 219 74.0
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.5e-89 334.0 214 75.2
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.5e-89 334.0 228 71.5
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.9e-89 333.6 208 77.4
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 1.9e-89 333.6 230 70.4
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 2.5e-89 333.2 213 75.6
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.5e-89 333.2 214 75.2
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.5e-89 333.2 230 70.9
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 5.7e-89 332.0 227 72.2
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.3e-88 330.9 221 71.5
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.3e-88 330.9 215 74.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 2.1e-88 330.1 214 75.2
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.8e-88 329.7 216 74.5
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 3.7e-88 329.3 219 74.4
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 3.7e-88 329.3 246 67.1
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 3.7e-88 329.3 224 69.6
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 4.8e-88 328.9 219 73.5
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 6.2e-88 328.6 216 74.1
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 8.2e-88 328.2 223 71.7
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 8.2e-88 328.2 223 71.7
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 8.2e-88 328.2 210 76.2
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.4e-87 327.4 226 71.7
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.4e-87 327.4 214 74.8
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.8e-87 327.0 219 74.0
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-87 327.0 223 71.3
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.8e-87 327.0 221 71.5
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.8e-87 327.0 215 72.1
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.4e-87 326.6 221 71.5
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 4.0e-87 325.9 221 71.5
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 4.0e-87 325.9 221 71.5
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 4.0e-87 325.9 221 71.5
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 4.0e-87 325.9 221 71.5
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 4.0e-87 325.9 223 71.3
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 4.0e-87 325.9 221 71.5
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 4.0e-87 325.9 228 71.1
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 5.3e-87 325.5 219 74.0
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 5.3e-87 325.5 221 71.9
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 5.3e-87 325.5 230 68.7
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 6.9e-87 325.1 213 75.6
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 9.0e-87 324.7 214 72.4
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.0e-87 324.7 215 71.6
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 2.6e-86 323.2 219 74.0
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 3.4e-86 322.8 212 73.6
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 5.8e-86 322.0 224 71.4
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 5.8e-86 322.0 213 73.7
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.0e-85 321.2 223 70.9
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.3e-85 320.9 209 73.2
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.2e-85 320.1 215 71.6
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.1e-84 317.8 214 72.0
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 3.2e-84 316.2 217 70.0
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 4.2e-84 315.8 212 70.8
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.2e-84 315.8 215 72.1
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 5.5e-84 315.5 215 72.1
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.2e-83 314.3 213 70.4
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 3.5e-83 312.8 213 71.4
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.0e-82 311.2 213 70.9
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 3.0e-82 309.7 212 69.8
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 5.1e-82 308.9 213 69.0
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 8.7e-82 308.1 221 67.4
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.9e-81 307.0 210 70.0
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 7.4e-81 305.1 222 68.0
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 7.4e-81 305.1 222 68.0
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 9.7e-81 304.7 220 68.2
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 9.7e-81 304.7 222 68.0
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 9.7e-81 304.7 230 67.8
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 8.2e-80 301.6 219 68.0
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.8e-79 300.4 222 67.1
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.1e-79 299.3 275 56.4
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.1e-79 299.3 278 55.0
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 4.1e-79 299.3 224 64.3
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 6.9e-79 298.5 278 55.4
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 6.9e-79 298.5 215 66.5
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.0e-77 294.7 182 79.7
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 2.9e-77 293.1 174 78.2
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 5.0e-77 292.4 213 69.0
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.4e-76 290.8 178 76.4
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 1.6e-75 287.3 200 70.5
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.8e-74 283.9 215 64.2
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 5.1e-74 282.3 208 64.4
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 2.8e-72 276.6 221 64.3
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 6.3e-72 275.4 229 61.6
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 8.2e-72 275.0 214 62.6
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 8.2e-72 275.0 214 62.6
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.4e-71 274.2 218 64.7
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 1.8e-71 273.9 211 63.0
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.8e-71 273.9 214 62.1
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-71 273.9 214 62.1
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.8e-71 273.9 214 62.1
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 4.1e-71 272.7 228 60.5
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.3e-64 251.1 237 57.4
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 2.0e-62 243.8 195 60.5
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 6.1e-59 232.3 149 78.5
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.0e-58 231.5 229 53.7
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 1.8e-58 230.7 149 77.9
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 3.3e-57 226.5 216 57.9
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.4e-57 226.1 291 47.1
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.1e-55 221.5 214 55.6
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 3.5e-54 216.5 132 78.8
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.1e-47 194.9 212 47.2
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.4e-47 194.5 211 50.2
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 7.2e-44 182.2 140 64.3
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 3.0e-42 176.8 189 54.5
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 6.3e-40 169.1 160 50.0
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.8e-30 135.6 89 78.7
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 1.4e-18 98.2 76 61.8
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.8e-18 95.9 64 65.6
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 2.4e-15 87.4 89 50.6
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 2.3e-13 80.9 75 53.3
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 2.8e-11 73.9 65 53.8
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 2.3e-10 70.9 72 54.2
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 4.0e-10 70.1 81 53.1
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.1e-07 62.0 40 70.0
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 3.2e-07 60.5 44 63.6


User provided reference genes

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