Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 4.5e-183 644.4 322 100.0
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 2.2e-113 412.9 313 65.8
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.9e-104 383.3 322 62.7
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 1.8e-102 376.7 328 59.5
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.5e-101 373.6 327 59.9
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.4e-99 367.1 322 59.3
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.8e-99 366.7 330 57.9
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 2.4e-99 366.3 328 58.2
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 7.7e-98 361.3 323 59.4
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 3.8e-97 359.0 251 70.1
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 5.0e-97 358.6 251 70.5
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 2.1e-95 353.2 326 58.0
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 6.1e-95 351.7 325 56.3
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.0e-95 351.3 274 64.6
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 8.0e-95 351.3 325 56.9
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.4e-94 350.5 326 55.5
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.8e-94 350.1 324 58.3
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 3.0e-94 349.4 327 57.2
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 3.0e-94 349.4 323 56.3
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 4.0e-94 349.0 326 56.1
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 5.2e-94 348.6 328 55.2
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.8e-94 347.8 317 57.7
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.1e-93 347.4 324 55.9
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-93 347.1 317 57.7
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.0e-93 346.7 322 57.1
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 2.0e-93 346.7 332 54.8
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 3.3e-93 345.9 257 65.4
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 4.4e-93 345.5 307 60.9
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 4.4e-93 345.5 327 56.0
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 4.4e-93 345.5 328 56.1
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 7.5e-93 344.7 328 55.5
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 9.7e-93 344.4 321 57.3
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.3e-92 344.0 256 65.2
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 6.3e-92 341.7 274 60.6
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 6.3e-92 341.7 256 64.1
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 8.2e-92 341.3 249 69.1
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.1e-91 340.9 269 63.6
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.4e-91 340.5 330 53.6
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 1.4e-91 340.5 287 62.7
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.8e-91 340.1 331 57.1
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.4e-91 339.7 287 59.9
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 3.1e-91 339.3 326 54.3
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 7.0e-91 338.2 318 56.0
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 9.1e-91 337.8 317 56.8
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 9.1e-91 337.8 337 54.0
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 1.6e-90 337.0 276 61.6
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 2.7e-90 336.3 325 56.6
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.5e-90 335.9 333 52.6
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 7.7e-90 334.7 328 54.6
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.0e-89 334.3 317 56.2
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.2e-89 333.2 333 52.0
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.9e-89 332.8 254 65.4
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 2.9e-89 332.8 249 67.5
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.9e-88 330.1 319 54.9
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 2.5e-88 329.7 320 55.3
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.5e-88 329.7 276 61.6
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.2e-88 329.3 331 52.3
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.2e-88 328.9 254 64.6
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 9.4e-88 327.8 322 54.7
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 1.2e-87 327.4 284 59.9
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.1e-87 326.6 324 52.2
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 2.1e-87 326.6 329 53.8
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.1e-87 326.6 318 53.1
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.6e-87 325.9 329 53.8
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 3.6e-87 325.9 300 56.3
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 5.2e-86 322.0 253 63.6
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 6.8e-86 321.6 325 53.2
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.5e-85 320.5 326 50.0
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 1.5e-85 320.5 265 62.6
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.0e-85 320.1 325 54.2
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.0e-85 320.1 272 59.2
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 2.0e-85 320.1 328 50.9
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 2.8e-84 316.2 328 53.0
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 2.8e-84 316.2 252 63.1
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 4.8e-84 315.5 275 56.7
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.8e-84 315.5 329 51.4
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-83 314.3 330 52.7
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.4e-83 313.9 294 55.1
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.8e-83 313.5 256 61.7
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 2.4e-83 313.2 270 56.7
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.4e-83 313.2 322 52.8
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 2.4e-83 313.2 275 56.7
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 7.0e-83 311.6 326 51.8
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 9.1e-83 311.2 272 61.0
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 9.1e-83 311.2 272 61.0
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-82 310.8 329 50.8
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-82 310.5 331 51.1
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.7e-82 309.7 330 52.1
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 3.5e-82 309.3 332 50.3
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.5e-82 308.9 325 51.4
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 4.5e-82 308.9 252 56.7
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 4.5e-82 308.9 252 57.1
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 4.5e-82 308.9 252 56.7
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.9e-82 308.5 330 51.8
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 5.9e-82 308.5 325 50.2
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 7.7e-82 308.1 252 57.1
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.0e-81 307.8 330 52.4
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.0e-81 307.8 330 51.8
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.0e-81 307.8 330 51.8
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.0e-81 307.8 251 57.4
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.7e-81 307.0 319 52.0
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.7e-81 307.0 321 51.1
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 2.2e-81 306.6 275 54.9
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 5.0e-81 305.4 252 56.7
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 5.0e-81 305.4 255 60.4
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 6.5e-81 305.1 283 57.2
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 6.5e-81 305.1 327 50.8
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 5.5e-80 302.0 284 53.9
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 2.7e-79 299.7 318 51.3
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 1.8e-78 297.0 325 48.0
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.0e-78 295.8 355 48.5
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 4.0e-78 295.8 340 47.6
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.5e-77 291.6 329 49.2
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.3e-76 290.8 325 49.5
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.9e-76 288.9 325 49.2
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 6.3e-76 288.5 292 52.7
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.4e-75 287.3 252 58.3
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 3.1e-75 286.2 329 48.3
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 4.1e-75 285.8 274 55.5
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 1.2e-74 284.3 325 49.8
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.6e-74 283.9 325 46.8
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 2.0e-74 283.5 329 48.0
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 2.7e-74 283.1 288 54.5
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 7.7e-74 281.6 325 46.2
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.3e-73 280.8 319 48.0
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 6.6e-73 278.5 294 49.7
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 8.6e-73 278.1 322 45.7
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.1e-72 277.7 307 47.6
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 1.5e-72 277.3 316 47.2
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.9e-72 276.9 259 54.8
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.2e-71 274.2 280 50.7
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.6e-71 273.9 288 49.3
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 2.1e-71 273.5 271 53.9
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 2.1e-71 273.5 277 51.3
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 2.1e-71 273.5 292 48.6
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 2.1e-71 273.5 306 47.4
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.7e-71 272.3 281 53.0
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 1.0e-70 271.2 243 56.0
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 5.2e-70 268.9 255 52.9
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 5.2e-70 268.9 290 49.7
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 6.8e-70 268.5 287 50.5
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 1.2e-69 267.7 264 53.0
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.5e-69 267.3 282 48.9
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 1.5e-69 267.3 253 52.2
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 4.4e-69 265.8 274 50.0
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 1.3e-68 264.2 256 53.1
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 2.2e-68 263.5 327 44.3
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.4e-67 260.8 309 49.2
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.8e-67 260.4 319 43.9
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 9.2e-67 258.1 252 52.4
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 5.2e-62 242.3 161 68.3
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 3.2e-59 233.0 251 50.2
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.7e-58 229.9 158 65.2
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.6e-55 220.7 237 49.4
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 9.8e-53 211.5 219 51.1
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 1.3e-52 211.1 229 49.8
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.2e-52 210.3 154 65.6
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 6.6e-49 198.7 223 49.8
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.5e-48 196.8 149 67.1
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 8.9e-46 188.3 236 46.2
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.5e-45 187.6 222 43.7
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 2.4e-43 180.3 281 42.0
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.5e-40 171.0 138 59.4
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.3e-40 169.5 246 40.7
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 9.9e-37 158.3 250 38.4
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 4.8e-31 139.4 107 68.2
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 4.9e-28 129.4 89 67.4
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 2.4e-27 127.1 224 36.6
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.8e-23 113.6 81 67.9
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.1e-22 111.7 72 72.2
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.4e-22 111.3 91 61.5
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.4e-22 111.3 80 71.2
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 2.2e-20 104.0 77 63.6
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 8.1e-15 85.5 117 37.6
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.0e-13 80.9 58 65.5


User provided reference genes

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