Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 1.6e-269 932.2 468 100.0
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 2.0e-211 739.2 467 81.4
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 6.4e-178 627.9 361 86.4
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 1.9e-177 626.3 371 85.2
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 1.9e-177 626.3 417 77.7
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 2.4e-177 625.9 468 72.2
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 5.4e-177 624.8 513 67.8
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 7.1e-177 624.4 369 84.3
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 7.1e-177 624.4 368 84.5
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.6e-176 623.2 387 82.4
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.6e-176 623.2 368 84.2
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 3.5e-176 622.1 390 81.3
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 4.6e-176 621.7 473 71.0
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 4.6e-176 621.7 469 70.6
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 7.8e-176 620.9 368 84.0
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.7e-175 619.8 468 70.5
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 3.0e-175 619.0 477 70.9
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 6.6e-175 617.8 399 80.7
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 6.6e-175 617.8 473 70.6
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 8.7e-175 617.5 379 82.1
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 5.6e-174 614.8 425 74.1
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 2.1e-173 612.8 397 78.6
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 2.8e-173 612.5 439 74.3
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 2.8e-173 612.5 474 71.3
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 1.1e-172 610.5 426 75.1
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.1e-172 610.5 406 76.1
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 1.1e-172 610.5 470 68.9
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 5.3e-172 608.2 479 69.3
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 5.3e-172 608.2 401 79.1
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 9.0e-172 607.4 348 87.4
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 2.0e-171 606.3 362 84.0
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 3.4e-171 605.5 432 72.9
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 4.4e-171 605.1 422 73.0
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 7.6e-171 604.4 476 68.7
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 7.6e-171 604.4 468 69.7
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.3e-170 603.6 340 88.5
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 2.2e-170 602.8 449 71.3
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 3.8e-170 602.1 467 69.2
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 1.4e-169 600.1 387 78.8
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.4e-169 600.1 387 78.8
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 1.9e-169 599.7 361 83.9
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 1.9e-169 599.7 398 77.6
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 2.4e-169 599.4 413 74.6
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 9.3e-169 597.4 416 74.5
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 9.3e-169 597.4 387 78.3
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 1.2e-168 597.0 483 67.7
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 2.7e-168 595.9 408 76.5
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.5e-168 595.5 387 78.0
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.5e-168 595.5 387 78.0
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.0e-167 594.0 475 67.6
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 6.6e-167 591.3 343 86.6
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.9e-166 589.7 409 74.3
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 1.9e-166 589.7 384 78.4
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 3.3e-166 589.0 360 81.4
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.3e-165 587.0 405 75.8
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 1.3e-165 587.0 394 77.7
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 1.6e-165 586.6 360 81.1
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 4.8e-165 585.1 360 80.8
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 4.8e-165 585.1 360 80.8
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.1e-164 583.9 406 74.4
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.4e-164 583.6 395 75.2
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.4e-164 583.6 388 77.1
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 2.4e-164 582.8 357 81.2
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 3.1e-164 582.4 356 81.5
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 3.1e-164 582.4 357 81.5
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 4.0e-164 582.0 387 76.5
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 4.0e-164 582.0 357 81.2
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 5.3e-164 581.6 343 84.8
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 5.3e-164 581.6 396 74.2
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 5.3e-164 581.6 360 80.6
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 9.0e-164 580.9 365 80.3
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 5.8e-163 578.2 362 79.6
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 7.6e-163 577.8 358 81.8
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.3e-162 577.0 365 78.9
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 1.7e-162 576.6 364 79.1
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 2.9e-162 575.9 392 76.0
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 2.9e-162 575.9 347 81.8
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.9e-162 575.9 568 58.1
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 4.9e-162 575.1 386 75.6
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 6.4e-162 574.7 367 79.3
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.9e-161 573.2 364 78.8
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 1.9e-161 573.2 364 78.8
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 1.9e-161 573.2 360 79.4
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 4.2e-161 572.0 399 73.9
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 5.4e-161 571.6 370 77.8
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 5.4e-161 571.6 372 79.3
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 2.5e-158 562.8 358 79.6
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 3.3e-158 562.4 343 82.2
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 5.6e-158 561.6 357 78.4
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.4e-156 557.0 394 73.9
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 3.1e-156 555.8 338 82.2
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 7.1e-153 544.7 314 87.3
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.1e-152 543.1 395 73.2
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 4.6e-152 542.0 396 70.7
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 3.0e-151 539.3 298 90.6
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 3.9e-151 538.9 362 76.2
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 3.3e-150 535.8 389 72.5
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.1e-148 529.3 361 73.7
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 4.0e-148 528.9 407 68.3
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 2.9e-146 522.7 431 66.4
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 7.1e-145 518.1 333 81.1
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 7.9e-144 514.6 475 62.7
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.9e-142 510.0 353 72.2
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 2.4e-140 503.1 354 70.3
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 5.9e-139 498.4 368 67.7
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 5.9e-139 498.4 314 78.0
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 7.7e-139 498.0 310 79.7
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.1e-137 494.2 313 80.8
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 3.0e-135 486.1 343 70.8
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.7e-133 480.3 473 59.2
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 2.6e-131 473.0 347 67.1
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.7e-130 470.3 339 70.5
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 1.5e-126 457.2 375 67.2
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 2.5e-121 439.9 275 79.6
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 9.4e-121 438.0 282 79.1
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 5.3e-116 422.2 273 78.0
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 2.9e-114 416.4 267 79.0
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 9.4e-113 411.4 251 82.1
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 2.1e-96 357.1 205 88.3
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 1.3e-82 311.2 190 81.6
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 1.9e-81 307.4 253 66.4
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 4.4e-78 296.2 330 47.9
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 1.9e-76 290.8 181 81.2
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 7.1e-76 288.9 333 46.8
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.4e-61 238.8 143 81.8
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.1e-60 238.4 357 45.4
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.0e-58 231.9 132 84.8
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.3e-58 230.7 349 36.1
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 9.9e-54 215.3 121 85.1
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 5.6e-49 199.5 369 37.9
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.7e-45 188.0 109 84.4
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.0e-38 164.5 109 78.0
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.1e-33 148.7 143 55.9
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.1e-31 142.1 129 61.2
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 1.6e-27 128.3 80 80.0
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 4.6e-27 126.7 79 79.7
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 4.6e-27 126.7 101 62.4
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 1.5e-25 121.7 109 62.4
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 5.7e-25 119.8 84 71.4
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 2.2e-24 117.9 75 78.7
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 2.2e-24 117.9 75 78.7
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 2.2e-24 117.9 75 78.7
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.8e-23 114.8 63 88.9
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 9.0e-23 112.5 75 74.7
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 9.0e-23 112.5 75 74.7
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 2.6e-22 110.9 190 36.3
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 3.4e-22 110.5 75 73.3
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 1.1e-17 95.5 64 73.4
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 1.3e-13 82.0 54 77.8
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 3.2e-12 77.4 44 84.1
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 4.2e-12 77.0 83 51.8
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 7.4e-09 66.2 67 53.7
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.3e-08 65.5 36 88.9
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 1.7e-08 65.1 35 88.6
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 3.1e-07 60.8 73 45.2
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 3.1e-07 60.8 37 75.7
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 5.3e-07 60.1 36 77.8
arahy.Tifrunner.gnm1.ann1.SQ6FML Arachis hypogaea HOM05D000121 ORTHO05D031608 1.6e-06 58.5 77 41.6


User provided reference genes

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