Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 1.1e-110 403.7 258 100.0
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 9.7e-43 177.9 259 54.8
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.3e-39 167.5 227 58.1
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 1.1e-38 164.5 286 49.0
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 3.0e-36 156.4 255 52.9
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 3.0e-36 156.4 255 52.9
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 2.0e-35 153.7 254 52.8
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.8e-33 147.1 268 50.0
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 4.1e-33 146.0 258 50.0
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.2e-31 140.2 278 44.2
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.4e-30 137.5 251 51.0
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.6e-29 134.0 210 46.7
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 7.9e-29 131.7 206 47.6
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 7.9e-29 131.7 255 50.6
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 7.9e-29 131.7 206 46.6
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 7.9e-29 131.7 209 54.5
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 1.0e-28 131.3 272 47.8
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 8.8e-28 128.3 218 45.0
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.5e-27 127.5 143 55.9
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.6e-27 126.7 192 46.4
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 7.4e-27 125.2 206 50.0
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 6.3e-26 122.1 267 49.1
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 7.0e-25 118.6 271 46.5
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 1.2e-24 117.9 145 56.6
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 1.6e-24 117.5 282 41.5
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 2.6e-24 116.7 276 45.3
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.5e-24 116.3 260 48.5
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 4.5e-24 115.9 252 46.4
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 7.7e-24 115.2 268 45.1
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.0e-23 114.8 139 58.3
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.0e-23 114.8 144 55.6
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.0e-23 114.8 229 46.7
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.2e-23 113.6 249 34.9
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 6.5e-23 112.1 288 44.4
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.5e-22 110.9 271 45.8
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.9e-22 110.5 271 45.8
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 1.9e-22 110.5 271 45.8
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.9e-22 110.5 259 47.9
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 2.5e-22 110.2 149 51.0
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 3.2e-22 109.8 255 45.9
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 3.2e-22 109.8 255 45.9
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 3.2e-22 109.8 275 43.6
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.5e-22 109.0 283 45.2
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 5.5e-22 109.0 266 46.6
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 9.4e-22 108.2 257 43.6
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.2e-21 107.8 272 40.4
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.2e-21 107.8 263 45.2
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 1.2e-21 107.8 255 45.5
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.6e-21 107.5 282 44.3
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 2.1e-21 107.1 270 41.5
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.7e-21 106.7 286 44.8
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 2.7e-21 106.7 264 45.8
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 3.6e-21 106.3 270 41.5
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 3.6e-21 106.3 192 39.6
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 4.7e-21 105.9 273 43.6
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 6.1e-21 105.5 290 43.8
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 6.1e-21 105.5 229 42.4
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 6.1e-21 105.5 256 41.4
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 8.0e-21 105.1 250 42.0
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 8.0e-21 105.1 259 43.2
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.0e-20 104.8 255 43.1
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.4e-20 104.4 158 48.7
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 1.8e-20 104.0 285 42.1
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 1.8e-20 104.0 276 45.7
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 2.3e-20 103.6 254 46.9
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 2.3e-20 103.6 282 39.7
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.3e-20 103.6 254 46.1
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 5.2e-20 102.4 212 47.2
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 6.7e-20 102.1 251 44.6
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 6.7e-20 102.1 201 53.2
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 8.8e-20 101.7 204 50.5
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 8.8e-20 101.7 277 41.5
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 8.8e-20 101.7 212 49.1
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.8e-20 101.7 263 44.9
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 1.1e-19 101.3 270 43.3
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.5e-19 100.9 194 42.8
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.5e-19 100.9 152 46.7
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.0e-19 100.5 209 48.8
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.0e-19 100.5 257 43.2
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 3.3e-19 99.8 221 45.2
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 4.4e-19 99.4 213 48.4
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 4.4e-19 99.4 163 44.2
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 4.4e-19 99.4 283 42.0
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 5.7e-19 99.0 184 42.9
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.7e-19 99.0 296 40.5
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.7e-19 99.0 280 42.5
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 7.5e-19 98.6 285 42.1
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 7.5e-19 98.6 258 42.2
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.3e-18 97.8 267 42.3
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 2.2e-18 97.1 288 41.3
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 2.2e-18 97.1 264 42.4
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 2.2e-18 97.1 215 50.7
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.8e-18 96.7 261 43.7
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 2.8e-18 96.7 264 47.7
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.7e-18 96.3 263 43.0
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 3.7e-18 96.3 261 43.3
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.7e-18 96.3 172 42.4
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 6.3e-18 95.5 303 37.6
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 6.3e-18 95.5 279 43.7
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 8.2e-18 95.1 235 46.8
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.1e-17 94.7 297 39.1
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.4e-17 94.4 274 41.6
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 1.4e-17 94.4 210 49.0
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.4e-17 94.4 265 43.4
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.4e-17 94.4 297 39.1
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 1.8e-17 94.0 216 49.5
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 2.4e-17 93.6 284 39.8
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.4e-17 93.6 211 47.9
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.1e-17 93.2 297 38.4
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.1e-17 93.2 197 46.7
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 5.3e-17 92.4 206 47.1
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 7.0e-17 92.0 245 40.0
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 9.1e-17 91.7 295 39.7
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 9.1e-17 91.7 295 39.7
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 1.2e-16 91.3 179 41.9
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 2.0e-16 90.5 289 38.8
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 4.5e-16 89.4 222 46.8
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 5.9e-16 89.0 266 42.5
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 5.9e-16 89.0 263 44.1
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.7e-15 87.4 218 44.5
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.7e-15 87.4 270 43.7
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.2e-15 87.0 223 44.4
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.9e-15 86.7 257 42.0
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 5.0e-15 85.9 219 45.7
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 5.0e-15 85.9 259 43.2
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 6.5e-15 85.5 262 42.4
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 8.5e-15 85.1 224 43.3
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.1e-14 84.7 289 44.3
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.5e-14 84.3 286 38.8
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 1.9e-14 84.0 59 69.5
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.5e-14 83.6 164 54.3
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 4.2e-14 82.8 207 43.0
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 9.4e-14 81.6 265 38.1
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 9.4e-14 81.6 265 38.1
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 9.4e-14 81.6 265 38.1
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 9.4e-14 81.6 229 45.9
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 1.2e-13 81.3 272 43.8
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.6e-13 80.9 277 37.9
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 2.1e-13 80.5 253 39.5
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.7e-13 80.1 175 38.9
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 3.6e-13 79.7 225 43.1
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 3.6e-13 79.7 269 39.8
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.6e-13 79.7 271 39.9
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.7e-13 79.3 205 41.0
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 8.0e-13 78.6 282 40.4
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.4e-12 77.8 306 36.9
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 1.8e-12 77.4 265 38.1
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.3e-12 77.0 263 39.2
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 3.0e-12 76.6 271 40.2
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 3.0e-12 76.6 213 44.6
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 1.2e-11 74.7 244 41.8
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.2e-11 74.7 244 41.8
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 2.6e-11 73.6 258 34.9
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.4e-11 73.2 219 42.9
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 7.5e-11 72.0 221 40.7
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 9.8e-11 71.6 190 45.8
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 1.3e-10 71.2 53 64.2
Aqoxy7G00777 Aquilegia oxysepala HOM05D024910 ORTHO05D014828 7.0e-09 65.5 67 50.7
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 7.0e-09 65.5 227 38.8
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.2e-08 64.7 119 56.3
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.2e-08 64.7 226 38.5
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 4.5e-08 62.8 171 31.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 7.7e-08 62.0 257 37.4
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.0e-07 61.6 128 37.5
Pp3c12_4280 Physcomitrium patens HOM05D001293 ORTHO05D006204 1.3e-07 61.2 111 31.5
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 8.5e-07 58.5 65 72.3
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.9e-06 57.4 65 69.2


User provided reference genes

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