Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 4.6e-112 407.9 205 100.0
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 7.2e-49 198.0 215 58.1
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 6.3e-45 184.9 213 52.6
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 8.2e-45 184.5 214 52.3
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 3.1e-44 182.6 225 51.6
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 3.9e-39 165.6 208 52.4
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 5.7e-38 161.8 221 48.4
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 9.1e-36 154.5 221 48.0
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.2e-32 144.1 234 42.3
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 5.2e-31 138.7 223 45.7
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 4.4e-30 135.6 213 45.5
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 5.7e-30 135.2 216 44.4
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 1.3e-29 134.0 226 42.9
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 2.8e-29 132.9 232 43.1
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 2.4e-28 129.8 243 41.2
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 2.4e-28 129.8 225 40.9
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 4.1e-28 129.0 224 44.6
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 4.1e-28 129.0 226 41.6
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 5.3e-28 128.6 230 40.9
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.9e-26 122.9 227 44.1
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 8.5e-26 121.3 233 41.2
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 2.5e-25 119.8 221 44.3
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 9.4e-25 117.9 240 40.4
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 1.2e-24 117.5 221 43.4
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 1.6e-24 117.1 238 41.2
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.1e-24 116.7 229 42.4
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.1e-24 116.7 235 41.3
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 2.7e-24 116.3 234 40.2
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.4e-23 114.0 234 40.2
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 1.4e-23 114.0 219 40.6
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 1.4e-23 114.0 233 39.5
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.3e-23 113.2 244 39.3
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 3.0e-23 112.8 224 41.1
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 4.0e-23 112.5 233 40.8
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 8.8e-23 111.3 229 41.0
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 2.0e-22 110.2 215 43.3
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 3.4e-22 109.4 219 41.6
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 4.4e-22 109.0 204 42.2
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 7.5e-22 108.2 255 38.0
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 7.5e-22 108.2 241 37.8
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 1.7e-21 107.1 244 36.5
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.7e-21 107.1 217 39.2
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 2.2e-21 106.7 259 36.3
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 3.7e-21 105.9 283 35.3
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 6.3e-21 105.1 257 38.1
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 6.3e-21 105.1 222 39.6
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 6.3e-21 105.1 228 38.6
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 8.3e-21 104.8 258 38.0
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 1.1e-20 104.4 227 35.7
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 3.1e-20 102.8 248 36.7
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 5.4e-20 102.1 234 37.6
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.6e-19 100.5 222 39.6
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 1.6e-19 100.5 237 39.7
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.6e-19 100.5 188 45.2
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 2.0e-19 100.1 189 42.9
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.0e-19 100.1 225 39.6
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.5e-19 99.4 193 42.0
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 4.5e-19 99.0 239 37.7
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 4.5e-19 99.0 257 37.4
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 5.9e-19 98.6 218 40.4
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 7.7e-19 98.2 221 40.3
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.0e-18 97.8 248 35.9
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.3e-18 97.4 241 35.7
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 2.3e-18 96.7 258 36.8
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.8e-18 95.9 222 39.2
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 3.8e-18 95.9 245 33.9
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 5.0e-18 95.5 243 36.2
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 6.5e-18 95.1 222 38.7
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 6.5e-18 95.1 224 35.7
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.1e-17 94.4 218 37.2
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 1.1e-17 94.4 242 33.9
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 1.1e-17 94.4 254 36.6
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 1.1e-17 94.4 219 37.0
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 1.9e-17 93.6 246 33.3
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 2.5e-17 93.2 233 34.8
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 3.2e-17 92.8 201 40.3
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 5.5e-17 92.0 186 40.3
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 7.2e-17 91.7 258 36.0
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.2e-16 90.9 197 38.6
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.2e-16 90.9 247 36.0
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.6e-16 90.5 210 36.7
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.6e-16 90.5 238 33.2
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.1e-16 90.1 233 35.6
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 2.1e-16 90.1 234 35.5
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 2.8e-16 89.7 160 42.5
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.8e-16 89.7 236 34.3
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 3.6e-16 89.4 246 35.8
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 4.7e-16 89.0 238 36.1
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 2.3e-15 86.7 235 35.7
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 3.0e-15 86.3 210 35.2
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 4.0e-15 85.9 227 33.0
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 4.0e-15 85.9 203 35.5
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 5.2e-15 85.5 228 37.3
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 5.2e-15 85.5 123 44.7
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.5e-14 84.0 173 41.0
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.6e-14 83.2 245 33.1
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 5.7e-14 82.0 211 37.4
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 7.5e-14 81.6 224 35.3
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 2.8e-13 79.7 177 39.5
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.8e-13 79.7 125 44.8
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 2.8e-13 79.7 225 32.4
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 4.9e-13 79.0 195 35.9
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 4.9e-13 79.0 213 33.8
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.3e-13 78.6 118 44.9
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 8.3e-13 78.2 124 44.4
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 8.3e-13 78.2 202 34.7
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 1.1e-12 77.8 241 33.2
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 1.1e-12 77.8 241 33.2
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.1e-12 77.8 160 35.0
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.2e-11 74.3 242 32.2
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 1.2e-11 74.3 239 33.1
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 1.6e-11 73.9 239 32.6
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 1.6e-11 73.9 239 32.6
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 2.0e-11 73.6 239 32.6
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 2.7e-11 73.2 239 32.6
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 3.5e-11 72.8 165 34.5
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 3.5e-11 72.8 165 34.5
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 3.5e-11 72.8 110 48.2
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 5.9e-11 72.0 161 35.4
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 5.9e-11 72.0 123 46.3
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 5.9e-11 72.0 85 51.8
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 5.9e-11 72.0 197 33.5
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 7.8e-11 71.6 239 32.6
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 7.8e-11 71.6 236 31.8
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 7.8e-11 71.6 239 32.6
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 7.8e-11 71.6 239 32.6
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.0e-10 71.2 178 37.1
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.7e-10 70.5 176 32.4
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 1.7e-10 70.5 178 34.8
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.7e-10 70.5 238 31.9
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 2.3e-10 70.1 147 34.7
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 2.9e-10 69.7 165 33.9
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 2.9e-10 69.7 166 34.9
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 2.9e-10 69.7 167 37.7
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 2.9e-10 69.7 132 40.2
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 2.9e-10 69.7 178 34.3
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.9e-10 69.7 124 43.5
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 8.6e-10 68.2 250 29.2
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.1e-09 67.8 246 30.1
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.1e-09 67.8 239 31.0
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 3.3e-09 66.2 178 34.8
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 4.3e-09 65.9 161 36.6
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 5.6e-09 65.5 218 30.7
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 9.5e-09 64.7 254 29.1
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.6e-08 63.9 240 29.2
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.1e-08 63.5 201 35.3
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 2.8e-08 63.2 73 54.8
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 4.7e-08 62.4 131 39.7
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 4.7e-08 62.4 151 35.8
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 6.1e-08 62.0 199 33.7
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 6.1e-08 62.0 198 30.3
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 8.0e-08 61.6 106 41.5
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.4e-07 60.8 139 39.6
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 6.8e-07 58.5 86 44.2
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 4.4e-06 55.8 85 47.1
Os07g0686600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 7.5e-06 55.1 136 39.0


User provided reference genes

Program Settings