Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.6e-103 378.3 189 100.0
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.8e-94 349.4 187 92.5
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 5.9e-90 334.3 187 87.7
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 7.7e-90 334.0 194 88.7
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.0e-89 333.6 194 88.1
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.0e-89 333.6 188 88.3
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.3e-89 333.2 190 85.8
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.3e-89 333.2 188 88.3
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 2.2e-89 332.4 191 89.5
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 5.0e-89 331.3 189 84.7
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 6.5e-89 330.9 194 85.6
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 3.2e-88 328.6 191 85.3
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 4.2e-88 328.2 193 85.0
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.5e-88 327.8 195 86.2
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 5.5e-88 327.8 194 86.6
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 7.2e-88 327.4 193 86.0
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 1.6e-87 326.2 189 85.2
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 2.1e-87 325.9 193 84.5
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 2.1e-87 325.9 193 85.0
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.1e-87 325.9 197 82.2
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.6e-87 325.1 189 82.5
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 4.7e-87 324.7 189 82.5
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 6.1e-87 324.3 189 85.2
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 8.0e-87 323.9 189 83.1
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 8.0e-87 323.9 189 84.7
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.0e-86 323.6 197 82.2
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.0e-86 323.6 190 87.4
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 2.3e-86 322.4 191 83.8
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.3e-86 322.4 187 85.0
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 4.0e-86 321.6 194 82.5
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 4.0e-86 321.6 192 84.4
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 5.2e-86 321.2 193 83.4
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.8e-86 320.9 190 85.3
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.8e-86 320.9 189 84.7
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 8.8e-86 320.5 191 83.8
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.2e-85 320.1 187 82.9
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.0e-85 319.3 198 80.3
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.6e-85 318.9 192 83.3
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.4e-85 318.5 192 83.3
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 3.4e-85 318.5 189 82.5
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.3e-84 316.6 238 71.0
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.7e-84 316.2 198 79.8
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.2e-84 315.8 189 83.1
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.2e-84 315.8 189 83.1
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.2e-84 315.8 200 80.5
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 2.8e-84 315.5 193 82.9
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.8e-84 315.5 189 83.1
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 3.7e-84 315.1 197 80.2
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 3.7e-84 315.1 193 82.9
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.7e-84 315.1 201 78.6
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 4.8e-84 314.7 194 80.4
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.8e-84 314.7 196 81.1
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 4.8e-84 314.7 196 80.6
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 6.3e-84 314.3 192 80.7
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 8.3e-84 313.9 191 82.2
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 8.3e-84 313.9 195 80.0
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 3.1e-83 312.0 200 79.0
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 4.1e-83 311.6 199 78.4
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 5.4e-83 311.2 191 80.6
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 9.1e-83 310.5 199 77.4
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 9.1e-83 310.5 199 77.4
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 9.1e-83 310.5 192 82.3
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.1e-83 310.5 200 78.5
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.1e-83 310.5 200 78.5
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 9.1e-83 310.5 191 81.7
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 9.1e-83 310.5 194 80.9
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.2e-82 310.1 192 81.2
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.2e-82 310.1 193 81.3
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 2.0e-82 309.3 192 77.6
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.0e-82 309.3 210 73.8
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.7e-82 308.9 199 76.9
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 2.7e-82 308.9 199 77.4
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.5e-82 308.5 192 80.7
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.5e-82 308.5 192 80.7
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 5.9e-82 307.8 197 77.7
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 5.9e-82 307.8 197 77.7
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 5.9e-82 307.8 194 80.4
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.9e-82 307.8 200 76.5
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 7.7e-82 307.4 196 78.1
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 7.7e-82 307.4 199 76.9
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 7.7e-82 307.4 202 75.7
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.0e-81 307.0 190 80.5
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.0e-81 307.0 203 76.8
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.0e-81 307.0 196 79.6
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.7e-81 306.2 199 76.9
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 1.7e-81 306.2 194 76.8
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.7e-81 306.2 200 77.0
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 6.6e-81 304.3 199 76.4
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 6.6e-81 304.3 198 78.8
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 8.6e-81 303.9 201 74.1
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.1e-80 303.5 198 76.8
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.5e-80 303.1 198 77.3
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.5e-80 303.1 199 75.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 1.9e-80 302.8 199 75.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.9e-80 302.8 199 75.9
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.9e-80 302.8 201 76.6
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 3.3e-80 302.0 201 75.6
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 4.2e-80 301.6 205 75.1
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 5.5e-80 301.2 199 75.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.5e-80 301.2 200 77.5
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 5.5e-80 301.2 201 75.1
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 9.5e-80 300.4 194 78.4
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.2e-79 300.1 171 85.4
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.6e-79 299.7 204 76.0
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 2.8e-79 298.9 194 77.8
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.0e-78 297.0 198 76.3
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.4e-78 296.6 204 76.5
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.8e-78 296.2 199 75.4
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 2.3e-78 295.8 192 77.6
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 4.0e-78 295.0 191 79.6
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 8.9e-78 293.9 203 73.9
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 2.6e-77 292.4 199 75.4
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 2.2e-76 289.3 212 71.7
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 3.7e-76 288.5 195 75.9
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 8.3e-76 287.3 200 71.5
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.1e-75 287.0 200 71.5
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.4e-75 286.6 174 82.8
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.4e-75 285.8 186 76.9
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 2.4e-75 285.8 196 72.4
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 4.1e-75 285.0 199 71.9
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 9.2e-75 283.9 210 71.4
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 4.5e-74 281.6 198 73.2
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 5.9e-74 281.2 188 71.8
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.7e-73 279.6 192 71.4
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.3e-73 279.3 187 76.5
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 6.6e-73 277.7 192 73.4
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 3.3e-72 275.4 223 65.0
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.1e-71 272.7 175 78.9
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.8e-71 272.3 192 69.3
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 6.1e-71 271.2 180 76.1
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 6.1e-71 271.2 184 73.4
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.8e-70 269.6 201 69.2
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 3.4e-69 265.4 179 72.6
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 2.2e-68 262.7 184 70.1
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 3.2e-67 258.8 173 70.5
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 5.4e-67 258.1 214 65.9
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.2e-66 256.9 187 72.2
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 2.7e-66 255.8 233 60.5
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.5e-64 249.2 182 70.3
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 3.1e-62 242.3 201 60.7
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 8.9e-62 240.7 177 70.6
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.2e-61 240.4 189 65.6
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 3.5e-58 228.8 199 62.8
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.6e-55 219.9 153 75.2
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 7.8e-50 201.1 117 86.3
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.8e-47 192.6 114 80.7
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 4.9e-44 181.8 172 59.3
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 5.1e-41 171.8 100 87.0
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 6.6e-41 171.4 100 89.0
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 8.1e-39 164.5 100 85.0
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 5.3e-38 161.8 188 53.7
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.4e-37 159.1 97 80.4
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.3e-31 140.6 195 47.7
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.4e-30 137.1 72 88.9
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 6.9e-30 134.8 196 44.9
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 9.0e-30 134.4 75 80.0
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.5e-29 132.1 70 92.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 6.4e-28 128.3 112 61.6
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 2.1e-26 123.2 192 40.1
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 1.4e-22 110.5 185 40.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 2.4e-22 109.8 190 43.2
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 2.4e-22 109.8 98 63.3
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 3.4e-21 105.9 189 41.3
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 2.1e-18 96.7 71 74.6
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.8e-17 93.6 70 64.3
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.9e-17 92.4 56 73.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 1.1e-14 84.3 56 69.6
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.2e-13 80.9 51 80.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.0e-13 80.1 53 77.4
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 4.5e-13 79.0 171 32.7
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 4.6e-10 68.9 49 65.3
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 5.1e-09 65.5 70 52.9


User provided reference genes

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