Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 8.2e-108 393.7 188 100.0
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 8.5e-97 357.1 182 90.7
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.1e-96 356.7 185 89.7
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.1e-96 356.7 185 89.7
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 5.5e-96 354.4 186 87.1
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 2.9e-89 332.0 181 85.6
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.1e-88 330.1 184 81.5
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.1e-88 330.1 184 81.5
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 5.5e-88 327.8 184 79.3
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 9.4e-88 327.0 188 78.2
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 1.2e-87 326.6 185 80.0
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.8e-86 322.8 183 78.7
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 3.0e-86 322.0 183 77.6
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 6.7e-86 320.9 185 77.8
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 1.1e-85 320.1 184 77.7
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.5e-85 319.7 184 77.7
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 2.0e-85 319.3 187 77.5
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 2.0e-85 319.3 181 78.5
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.0e-85 319.3 185 80.5
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.0e-85 319.3 185 80.5
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 2.0e-85 319.3 179 81.0
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 2.6e-85 318.9 187 77.5
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 2.6e-85 318.9 180 78.9
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 4.4e-85 318.2 185 77.8
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 5.7e-85 317.8 191 75.9
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 1.3e-84 316.6 178 80.3
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.8e-84 315.5 181 80.7
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 3.7e-84 315.1 184 76.6
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 1.1e-83 313.5 182 77.5
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 1.1e-83 313.5 181 77.3
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 1.4e-83 313.2 182 76.4
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 1.4e-83 313.2 201 72.6
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.4e-83 313.2 184 77.2
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.4e-83 313.2 180 80.0
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 1.8e-83 312.8 182 76.9
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 1.8e-83 312.8 182 76.9
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.8e-83 312.8 185 76.2
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.8e-83 312.8 180 80.0
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 3.1e-83 312.0 182 76.4
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 4.1e-83 311.6 182 76.9
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 5.3e-83 311.2 184 76.1
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 7.0e-83 310.8 184 75.0
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 9.1e-83 310.5 182 76.4
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 9.1e-83 310.5 178 78.1
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 9.1e-83 310.5 178 78.1
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 9.1e-83 310.5 184 75.5
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 1.2e-82 310.1 185 75.7
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-82 310.1 185 75.7
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-82 310.1 185 75.7
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 1.2e-82 310.1 187 75.4
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.6e-82 309.7 182 76.4
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.6e-82 309.7 183 74.9
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.6e-82 309.7 183 76.0
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.6e-82 309.7 183 74.3
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 2.6e-82 308.9 178 77.5
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 2.6e-82 308.9 185 75.1
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.5e-82 308.1 185 74.6
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 5.9e-82 307.8 178 77.5
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 7.7e-82 307.4 181 75.1
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 7.7e-82 307.4 185 74.6
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.0e-81 307.0 200 70.5
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.3e-81 306.6 179 73.7
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 1.3e-81 306.6 176 77.3
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 1.7e-81 306.2 182 74.7
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.7e-81 306.2 199 72.4
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 2.2e-81 305.8 185 73.0
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.2e-81 305.8 178 77.0
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 3.8e-81 305.1 182 74.2
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.1e-80 303.5 182 74.2
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.1e-80 303.5 185 73.5
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.9e-80 302.8 179 73.7
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.5e-80 302.4 176 75.0
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 3.2e-80 302.0 179 76.5
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 4.2e-80 301.6 186 71.5
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 4.2e-80 301.6 185 72.4
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.4e-80 300.4 185 72.4
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 1.2e-79 300.1 186 73.7
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 1.6e-79 299.7 184 72.3
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.1e-79 299.3 180 75.0
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 6.1e-79 297.7 185 70.3
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 8.0e-79 297.4 178 71.9
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 1.8e-78 296.2 185 70.3
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 3.0e-78 295.4 215 64.7
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 6.7e-78 294.3 185 69.7
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 6.7e-78 294.3 185 69.7
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 6.7e-78 294.3 178 70.2
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 4.4e-77 291.6 184 71.7
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 4.4e-77 291.6 184 71.7
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 5.7e-77 291.2 168 76.8
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 1.7e-76 289.7 185 69.7
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.1e-75 287.0 206 63.6
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 5.3e-75 284.6 154 82.5
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.6e-74 283.1 164 76.8
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.3e-73 280.0 164 76.2
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.5e-72 276.6 227 57.3
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.9e-72 276.2 227 56.8
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 1.9e-72 276.2 184 70.7
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 4.2e-72 275.0 190 66.3
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.6e-71 271.9 183 67.2
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 8.0e-71 270.8 158 76.6
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.0e-70 270.4 184 65.8
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.4e-70 270.0 151 77.5
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 2.3e-70 269.2 149 81.2
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.5e-69 266.5 171 73.7
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.5e-69 266.5 151 79.5
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 2.6e-69 265.8 179 65.4
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.3e-68 261.2 175 67.4
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.3e-68 261.2 175 67.4
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 4.1e-67 258.5 181 66.3
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 9.1e-67 257.3 154 72.7
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 3.5e-66 255.4 185 64.9
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 4.5e-66 255.0 184 60.9
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.3e-65 253.4 281 49.1
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 6.5e-65 251.1 146 78.8
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 1.1e-64 250.4 148 73.0
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 1.5e-64 250.0 155 70.3
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 4.2e-64 248.4 207 56.5
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.6e-63 246.5 141 75.9
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 5.7e-61 238.0 170 67.6
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 1.6e-58 229.9 182 61.0
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 1.5e-56 223.4 194 60.8
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 8.0e-55 217.6 181 50.8
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.0e-54 215.3 120 77.5
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 9.2e-51 204.1 182 55.5
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 5.9e-50 201.4 142 59.2
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 5.6e-48 194.9 199 51.3
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.6e-47 193.4 188 48.4
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.2e-44 183.0 91 85.7
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.9e-44 181.8 173 43.9
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.9e-44 181.8 173 43.9
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.6e-42 176.8 177 55.9
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.0e-42 174.9 90 84.4
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.3e-41 173.7 203 39.4
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 2.5e-40 169.5 120 61.7
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.8e-38 163.3 143 55.2
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.0e-37 159.8 180 38.9
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.6e-37 159.5 178 38.8
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.9e-36 155.2 149 53.0
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 6.0e-34 148.3 162 43.8
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 1.2e-31 140.6 141 44.0
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.5e-29 133.7 92 59.8
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 4.6e-26 122.1 90 60.0
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 2.1e-10 70.1 44 77.3
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 3.9e-09 65.9 46 60.9
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.4e-06 57.4 43 60.5


User provided reference genes

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